Detailed information of deep learning profile BP000549.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000549.1
Cell line/tissue: Ishikawa
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000BTT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 -0.00 0.00 0.00 0.05 0.09 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.05 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 0.10 0.09 0.00 -0.00 -0.00 0.01 -0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 6307 4422 4380 4222 4184 4349 4205 6159 4302 3954 4020 6068 3886 3963 4255 5637 5614 2996 10940 7 1 1598 18 7952 3255 10894 17303 377 4922 3781 3287 5778 3645 3703 4205 4390 5999 4175 3982 4088 3984 4111 4384 4440 4376 5080 6159 4453 6024 4776 ]
C [ 3323 3355 3755 3907 3530 3498 5519 3419 3566 3524 3573 3457 3595 5626 4576 2969 3155 2166 2018 6 1 2 17280 1433 7521 6404 8 7147 4953 4351 6482 3776 5330 3873 5647 5425 3399 3525 5489 5411 3735 3507 3363 3589 4532 3433 3679 5449 3532 3603 ]
G [ 3603 5512 5161 3472 3615 5491 3508 3571 5304 3596 5596 3731 6036 3662 3848 5528 4095 6710 4176 1 39 13780 15 6118 88 29 31 2118 1913 5195 2787 3601 3614 3748 3469 3364 3592 5529 3351 3519 3472 5449 5398 5161 3583 4486 3493 3309 3624 4962 ]
T [ 4120 4064 4057 5752 6024 4015 4121 4204 4181 6279 4164 4097 3836 4102 4674 3219 4489 5481 219 17339 17312 1973 40 1850 6489 26 11 7711 5565 4026 4797 4198 4764 6029 4032 4174 4363 4124 4531 4335 6162 4286 4208 4163 4862 4354 4022 4142 4173 4012 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.04 -0.05 -0.07 0.02 -0.02 0.01 0.02 0.07 0.09 -0.04 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.00 -0.03 -0.04 -0.08 0.08 -0.02 0.03 0.03 -0.05 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 -0.05 0.00 0.06 -0.02 0.07 -0.07 -0.05 -0.02 0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.04 0.10 0.09 0.02 -0.00 -0.02 0.03 -0.06 -0.06 0.03 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1052

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 495

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 111

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
BP000554.1 CEBPB ENCSR000EEE HepG2 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages