Detailed information of deep learning profile BP000549.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000549.1
Cell line/tissue: Ishikawa
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000BTT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.01 -0.00 -0.00 0.00 0.09 0.10 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.05 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.01 0.02 -0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.09 0.05 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4012 4173 4142 4022 4354 4862 4163 4208 4286 6162 4335 4531 4124 4363 4174 4032 6029 4764 4198 4797 4026 5565 7711 11 26 6489 1850 40 1973 17312 17339 219 5481 4489 3219 4674 4102 3836 4097 4164 6279 4181 4204 4121 4015 6024 5752 4057 4064 4120 ]
C [ 4962 3624 3309 3493 4486 3583 5161 5398 5449 3472 3519 3351 5529 3592 3364 3469 3748 3614 3601 2787 5195 1913 2118 31 29 88 6118 15 13780 39 1 4176 6710 4095 5528 3848 3662 6036 3731 5596 3596 5304 3571 3508 5491 3615 3472 5161 5512 3603 ]
G [ 3603 3532 5449 3679 3433 4532 3589 3363 3507 3735 5411 5489 3525 3399 5425 5647 3873 5330 3776 6482 4351 4953 7147 8 6404 7521 1433 17280 2 1 6 2018 2166 3155 2969 4576 5626 3595 3457 3573 3524 3566 3419 5519 3498 3530 3907 3755 3355 3323 ]
T [ 4776 6024 4453 6159 5080 4376 4440 4384 4111 3984 4088 3982 4175 5999 4390 4205 3703 3645 5778 3287 3781 4922 377 17303 10894 3255 7952 18 1598 1 7 10940 2996 5614 5637 4255 3963 3886 6068 4020 3954 4302 6159 4205 4349 4184 4222 4380 4422 6307 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 0.03 -0.06 -0.06 0.03 -0.02 -0.00 0.02 0.09 0.10 -0.04 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.00 -0.02 -0.05 -0.07 0.07 -0.02 0.06 0.00 -0.05 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 -0.05 0.03 0.03 -0.02 0.08 -0.08 -0.04 -0.03 0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.04 0.09 0.07 0.02 0.01 -0.02 0.02 -0.07 -0.05 0.04 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1052

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 495

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 111

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
BP000554.1 CEBPB ENCSR000EEE HepG2 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages