Detailed information of deep learning profile BP000530.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000530.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR287FWE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.01 0.06 0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 711 684 755 743 720 712 734 723 728 724 752 699 718 711 707 869 824 1372 43 1402 2667 6 2450 457 800 610 641 56 212 704 353 520 599 705 593 720 717 699 802 720 761 737 749 761 745 737 707 779 769 785 ]
C [ 588 623 638 627 605 619 601 615 630 660 599 628 563 480 747 798 560 15 5 247 0 2663 14 644 530 955 288 25 72 595 1930 881 684 501 620 612 668 701 631 621 572 556 600 615 621 637 624 620 628 589 ]
G [ 622 628 556 570 622 614 612 607 607 561 633 601 659 722 554 340 624 951 2611 407 1 2 102 537 421 634 107 2602 57 448 26 98 561 559 628 614 585 589 545 587 629 641 592 586 574 575 602 582 587 591 ]
T [ 768 754 740 749 742 744 742 744 724 744 705 761 749 776 681 682 681 351 30 633 21 18 123 1051 938 490 1653 6 2348 942 380 1190 845 924 848 743 719 700 711 761 727 755 748 727 749 740 756 708 705 724 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.02 -0.01 0.01 0.06 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.02 -0.04 -0.01 -0.04 0.08 -0.04 0.00 -0.00 0.00 0.02 -0.02 -0.02 -0.00 0.06 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.06 -0.00 -0.02 -0.02 0.03 0.00 -0.00 0.01 -0.03 0.08 -0.03 -0.01 -0.04 -0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2828

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 539

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 31

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages