Detailed information of deep learning profile BP000530.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000530.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR287FWE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.04 0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.06 0.01 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 724 705 708 756 740 749 727 748 755 727 761 711 700 719 743 848 924 845 1190 380 942 2348 6 1653 490 938 1051 123 18 21 633 30 351 681 682 681 776 749 761 705 744 724 744 742 744 742 749 740 754 768 ]
C [ 591 587 582 602 575 574 586 592 641 629 587 545 589 585 614 628 559 561 98 26 448 57 2602 107 634 421 537 102 2 1 407 2611 951 624 340 554 722 659 601 633 561 607 607 612 614 622 570 556 628 622 ]
G [ 589 628 620 624 637 621 615 600 556 572 621 631 701 668 612 620 501 684 881 1930 595 72 25 288 955 530 644 14 2663 0 247 5 15 560 798 747 480 563 628 599 660 630 615 601 619 605 627 638 623 588 ]
T [ 785 769 779 707 737 745 761 749 737 761 720 802 699 717 720 593 705 599 520 353 704 212 56 641 610 800 457 2450 6 2667 1402 43 1372 824 869 707 711 718 699 752 724 728 723 734 712 720 743 755 684 711 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 0.00 0.01 -0.01 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.04 -0.01 -0.03 0.08 -0.03 0.01 -0.00 0.00 0.03 -0.02 -0.02 -0.00 0.06 0.02 0.01 -0.01 0.00 0.01 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.06 -0.00 -0.02 -0.02 0.02 0.00 -0.00 0.00 -0.04 0.08 -0.04 -0.01 -0.04 -0.02 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.06 0.01 -0.01 0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2828

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2110

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 539

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 298

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 287

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 262

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 31

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages