Detailed information of deep learning profile BP000526.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000526.1
Cell line/tissue: Ishikawa
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BJC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.04 -0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.09 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.03 -0.00 0.06 0.01 -0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 1202 1232 1187 1208 1193 1214 1199 1162 1242 1297 1122 1183 1210 1311 1333 1380 1709 833 1612 3712 132 2732 717 1830 1799 298 5 50 843 64 480 958 1004 1050 1191 1262 1239 1238 1187 1139 1148 1198 1218 1258 1173 1160 1199 1212 1223 1188 ]
C [ 1237 1166 1208 1150 1213 1182 1193 1247 1162 1049 1131 1113 1152 1243 1186 980 281 153 857 210 4209 293 1258 909 1060 260 0 28 868 4572 1871 1216 841 1157 1391 1127 1263 1144 1093 1122 1108 1176 1216 1161 1222 1163 1148 1139 1156 1156 ]
G [ 1148 1089 1147 1173 1148 1143 1148 1083 1168 1156 1307 1187 1187 1093 1049 1313 1929 3152 1372 328 151 671 1607 798 1053 30 4710 5 585 7 56 1203 1449 1406 1058 1140 1148 1086 1216 1206 1306 1234 1185 1119 1147 1224 1190 1158 1164 1156 ]
T [ 1130 1230 1175 1186 1163 1178 1177 1225 1145 1215 1157 1234 1168 1070 1149 1044 798 579 876 467 225 1021 1135 1180 805 4129 2 4634 2421 74 2310 1340 1423 1104 1077 1188 1067 1249 1221 1250 1155 1109 1098 1179 1175 1170 1180 1208 1174 1217 ]

Hypothetical CWM

A [ -0.01 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.05 -0.05 0.03 -0.01 0.01 0.01 -0.02 -0.02 -0.02 0.00 -0.01 -0.02 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.02 -0.04 -0.01 -0.03 0.08 -0.04 0.01 -0.00 -0.00 0.02 -0.03 -0.02 -0.00 0.06 0.03 0.01 -0.00 0.01 0.01 ]
G [ 0.00 0.00 -0.00 0.00 0.02 0.05 0.00 -0.02 -0.02 0.02 0.01 -0.00 0.01 -0.05 0.09 -0.04 -0.01 -0.05 -0.02 0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 0.00 0.01 -0.01 0.04 -0.05 0.06 0.01 -0.00 0.02 -0.00 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3084

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1574

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1462

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 326

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 229

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 184

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 73

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages