Detailed information of deep learning profile BP000526.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000526.1
Cell line/tissue: Ishikawa
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BJC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 0.01 0.06 -0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1217 1174 1208 1180 1170 1175 1179 1098 1109 1155 1250 1221 1249 1067 1188 1077 1104 1423 1340 2310 74 2421 4634 2 4129 805 1180 1135 1021 225 467 876 579 798 1044 1149 1070 1168 1234 1157 1215 1145 1225 1177 1178 1163 1186 1175 1230 1130 ]
C [ 1156 1164 1158 1190 1224 1147 1119 1185 1234 1306 1206 1216 1086 1148 1140 1058 1406 1449 1203 56 7 585 5 4710 30 1053 798 1607 671 151 328 1372 3152 1929 1313 1049 1093 1187 1187 1307 1156 1168 1083 1148 1143 1148 1173 1147 1089 1148 ]
G [ 1156 1156 1139 1148 1163 1222 1161 1216 1176 1108 1122 1093 1144 1263 1127 1391 1157 841 1216 1871 4572 868 28 0 260 1060 909 1258 293 4209 210 857 153 281 980 1186 1243 1152 1113 1131 1049 1162 1247 1193 1182 1213 1150 1208 1166 1237 ]
T [ 1188 1223 1212 1199 1160 1173 1258 1218 1198 1148 1139 1187 1238 1239 1262 1191 1050 1004 958 480 64 843 50 5 298 1799 1830 717 2732 132 3712 1612 833 1709 1380 1333 1311 1210 1183 1122 1297 1242 1162 1199 1214 1193 1208 1187 1232 1202 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.00 0.02 -0.00 0.01 0.06 -0.05 0.04 -0.01 0.01 0.00 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 0.01 -0.02 -0.05 -0.01 -0.04 0.09 -0.05 0.01 -0.00 0.01 0.02 -0.02 -0.02 0.00 0.05 0.02 0.00 -0.00 0.00 0.00 ]
G [ 0.01 0.01 -0.00 0.01 0.03 0.06 -0.00 -0.02 -0.03 0.02 -0.00 -0.00 0.01 -0.04 0.08 -0.03 -0.01 -0.04 -0.02 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.02 -0.01 0.00 -0.02 -0.02 -0.02 0.01 0.01 -0.01 0.03 -0.05 0.05 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3084

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1574

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages