Detailed information of deep learning profile BP000524.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000524.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 -0.00 0.00 0.07 0.00 0.03 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.12 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.09 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.14 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.08 0.01 -0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3286 3339 3475 3346 3493 3374 3415 3352 3367 3492 3439 3229 3348 3405 3598 3877 4137 4352 2465 4823 11131 22 8227 2061 4037 4741 1024 0 134 2921 65 2072 2776 3353 2911 3397 3375 3311 3534 3449 3308 3476 3468 3491 3513 3545 3388 3469 3417 3409 ]
C [ 3319 3238 3160 3344 3189 3351 3290 3416 3362 3263 3052 3126 3099 3094 3446 3724 2607 731 300 2527 522 13254 723 3512 2717 3414 1020 0 69 2992 13151 4004 3357 2080 3210 3829 3527 3516 3137 3035 3039 3119 3093 3190 3232 3195 3326 3217 3289 3170 ]
G [ 3233 3202 3268 3223 3308 3171 3168 3102 3124 3102 3288 3622 3488 3477 3248 2524 3506 6229 8755 3453 679 48 1533 4611 2691 3181 77 13354 23 1651 3 202 3526 3673 3945 2861 3102 3092 3038 3338 3524 3434 3380 3322 3170 3303 3323 3291 3238 3256 ]
T [ 3516 3575 3451 3441 3364 3458 3481 3484 3501 3497 3575 3377 3419 3378 3062 3229 3104 2042 1834 2551 1022 30 2871 3170 3909 2018 11233 0 13128 5790 135 7076 3695 4248 3288 3267 3350 3435 3645 3532 3483 3325 3413 3351 3439 3311 3317 3377 3410 3519 ]

Hypothetical CWM

   
A [ -0.01 0.00 0.00 0.00 0.02 -0.01 0.02 0.08 -0.07 0.05 -0.00 0.01 0.02 -0.02 -0.01 -0.01 0.01 -0.01 -0.02 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.02 -0.01 -0.05 -0.00 -0.04 0.12 -0.05 0.02 0.01 0.01 0.04 -0.03 -0.03 0.01 0.09 0.04 0.02 0.00 0.01 0.02 ]
G [ 0.02 0.01 0.00 0.02 0.03 0.08 0.01 -0.02 -0.02 0.04 0.01 0.01 0.02 -0.05 0.14 -0.04 -0.01 -0.06 -0.02 0.02 0.02 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.02 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.05 -0.08 0.09 0.02 -0.01 0.02 0.00 0.01 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6774

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1060

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 451

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 140

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages