Detailed information of deep learning profile BP000524.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000524.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 0.01 0.08 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.14 -0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.09 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.12 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.03 0.00 0.07 0.00 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3519 3410 3377 3317 3311 3439 3351 3413 3325 3483 3532 3645 3435 3350 3267 3288 4248 3695 7076 135 5790 13128 0 11233 2018 3909 3170 2871 30 1022 2551 1834 2042 3104 3229 3062 3378 3419 3377 3575 3497 3501 3484 3481 3458 3364 3441 3451 3575 3516 ]
C [ 3256 3238 3291 3323 3303 3170 3322 3380 3434 3524 3338 3038 3092 3102 2861 3945 3673 3526 202 3 1651 23 13354 77 3181 2691 4611 1533 48 679 3453 8755 6229 3506 2524 3248 3477 3488 3622 3288 3102 3124 3102 3168 3171 3308 3223 3268 3202 3233 ]
G [ 3170 3289 3217 3326 3195 3232 3190 3093 3119 3039 3035 3137 3516 3527 3829 3210 2080 3357 4004 13151 2992 69 0 1020 3414 2717 3512 723 13254 522 2527 300 731 2607 3724 3446 3094 3099 3126 3052 3263 3362 3416 3290 3351 3189 3344 3160 3238 3319 ]
T [ 3409 3417 3469 3388 3545 3513 3491 3468 3476 3308 3449 3534 3311 3375 3397 2911 3353 2776 2072 65 2921 134 0 1024 4741 4037 2061 8227 22 11131 4823 2465 4352 4137 3877 3598 3405 3348 3229 3439 3492 3367 3352 3415 3374 3493 3346 3475 3339 3286 ]

Hypothetical CWM

   
A [ -0.01 0.00 0.01 0.00 0.02 -0.01 0.02 0.09 -0.08 0.05 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.02 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.02 0.02 -0.02 -0.06 -0.01 -0.04 0.14 -0.05 0.02 0.01 0.01 0.04 -0.02 -0.02 0.01 0.08 0.03 0.02 0.00 0.01 0.02 ]
G [ 0.02 0.01 0.00 0.02 0.04 0.09 0.01 -0.03 -0.03 0.04 0.01 0.01 0.02 -0.05 0.12 -0.04 -0.00 -0.05 -0.01 0.02 0.02 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.02 -0.01 0.01 -0.01 -0.01 -0.02 0.02 0.01 -0.00 0.05 -0.07 0.08 0.02 -0.01 0.02 0.00 0.00 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6774

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1060

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 451

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 140

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages