Detailed information of deep learning profile BP000364.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000364.1
Cell line/tissue: OCI-LY3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR756ZKG
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.05 0.16 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4119 5226 6190 5141 4183 4690 4223 4370 4881 4920 5003 5148 4698 3599 4688 5428 2697 1529 10811 2106 3536 14576 468 6550 1797 354 756 3325 7468 1925 3246 6719 3576 5509 4299 5101 4631 4459 5099 5980 4534 5054 5378 5393 5223 5118 5025 5106 5054 4892 ]
C [ 4955 5580 4553 4295 3831 4834 6911 6352 5630 5367 5219 4726 5262 6201 4510 2889 13252 17063 1833 9395 6769 591 139 199 663 130 1284 13263 1607 9948 6359 4699 4114 3955 3960 5088 5978 7014 5821 4268 5061 4813 4452 4681 4673 4772 4885 4787 4795 4893 ]
G [ 6107 4159 4520 4576 4746 4488 3695 3964 4482 4678 4584 4218 4775 3450 5798 7722 2025 654 3071 7171 2230 2577 18861 12713 10680 18944 15923 1103 9306 5308 1987 5661 4990 4268 7634 5304 5142 3500 3692 5071 5293 5120 5196 4744 4721 5267 5312 5188 5078 5183 ]
T [ 4625 4841 4543 5794 7046 5794 4977 5120 4813 4841 5000 5714 5071 6556 4810 3767 1832 560 4091 1134 7271 2062 338 344 6666 378 1843 2115 1425 2625 8214 2727 7126 6074 3913 4313 4055 4833 5194 4487 4918 4819 4780 4988 5189 4649 4584 4725 4879 4838 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.01 -0.01 0.08 -0.04 0.05 -0.06 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.02 0.10 0.17 -0.01 0.10 0.04 0.00 -0.03 -0.07 -0.00 -0.04 -0.02 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.06 0.05 -0.00 0.03 0.17 0.13 0.10 0.17 0.13 -0.02 0.13 0.04 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.02 -0.05 0.06 -0.01 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages