Detailed information of deep learning profile BP000055.1

  1. Home
  2. Deep Learning Profile > BP000055.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000055.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.03 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.02 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.21 -0.00 0.07 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.12 -0.00 0.04 0.01 0.01 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.23 0.09 0.07 0.22 0.15 -0.00 0.08 0.02 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3637 5020 6100 4507 3624 4324 3680 3984 4484 4633 4832 4783 4349 2887 4174 5147 2110 832 11766 1399 3140 14989 292 6883 1234 303 445 2798 7383 1743 2658 6619 3280 5451 4097 4736 4263 3952 4721 5856 3908 4675 4955 5312 4827 4801 4801 4751 4833 4514 ]
C [ 4747 5455 4011 3799 3355 4510 6866 6142 5531 5101 4776 4320 4692 6007 3942 2194 13564 17129 1059 9900 6781 568 73 90 700 90 721 13267 975 9338 6045 4542 3703 3524 3310 4952 5950 6995 5837 3795 5096 4355 4236 4127 4236 4432 4651 4625 4549 4742 ]
G [ 5852 3708 4451 4468 4228 4297 3303 3602 4264 4415 4264 3938 4625 3017 5830 7797 1475 326 2999 6555 1632 1753 18040 11419 10247 17920 15856 741 9226 5510 1985 5211 4861 4022 7744 4993 4602 2882 3107 4926 4991 4979 4801 4241 4345 5173 4956 4971 4809 4980 ]
T [ 4317 4370 3991 5779 7346 5422 4704 4825 4274 4404 4681 5512 4887 6642 4607 3415 1404 266 2729 699 7000 1243 148 161 6372 240 1531 1747 969 1962 7865 2181 6709 5556 3402 3872 3738 4724 4888 3976 4558 4544 4561 4873 5145 4147 4145 4206 4362 4317 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.03 -0.02 0.03 -0.01 -0.03 0.06 -0.02 -0.01 0.12 -0.06 0.07 -0.08 -0.06 -0.07 -0.03 0.03 -0.03 -0.03 0.04 -0.03 0.02 0.00 0.00 ]
C [ 0.01 0.02 0.06 0.04 -0.02 0.14 0.22 -0.03 0.15 0.06 -0.00 -0.04 -0.09 -0.01 -0.06 -0.05 0.18 -0.04 0.09 0.05 0.04 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.07 -0.04 -0.03 0.09 0.06 -0.01 0.02 0.23 0.18 0.13 0.22 0.18 -0.03 0.18 0.06 -0.01 0.03 0.03 -0.00 0.05 0.02 ]
T [ 0.01 0.01 0.03 0.00 -0.02 -0.04 -0.09 -0.04 -0.07 0.07 -0.04 -0.05 -0.11 0.05 -0.05 0.02 -0.03 -0.09 -0.02 0.04 -0.05 0.04 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2715

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 951

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages