Detailed information of deep learning profile BP000364.1

  1. Home
  2. Deep Learning Profile > BP000364.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000364.1
Cell line/tissue: OCI-LY3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR756ZKG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.16 0.05 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4838 4879 4725 4584 4649 5189 4988 4780 4819 4918 4487 5194 4833 4055 4313 3913 6074 7126 2727 8214 2625 1425 2115 1843 378 6666 344 338 2062 7271 1134 4091 560 1832 3767 4810 6556 5071 5714 5000 4841 4813 5120 4977 5794 7046 5794 4543 4841 4625 ]
C [ 5183 5078 5188 5312 5267 4721 4744 5196 5120 5293 5071 3692 3500 5142 5304 7634 4268 4990 5661 1987 5308 9306 1103 15923 18944 10680 12713 18861 2577 2230 7171 3071 654 2025 7722 5798 3450 4775 4218 4584 4678 4482 3964 3695 4488 4746 4576 4520 4159 6107 ]
G [ 4893 4795 4787 4885 4772 4673 4681 4452 4813 5061 4268 5821 7014 5978 5088 3960 3955 4114 4699 6359 9948 1607 13263 1284 130 663 199 139 591 6769 9395 1833 17063 13252 2889 4510 6201 5262 4726 5219 5367 5630 6352 6911 4834 3831 4295 4553 5580 4955 ]
T [ 4892 5054 5106 5025 5118 5223 5393 5378 5054 4534 5980 5099 4459 4631 5101 4299 5509 3576 6719 3246 1925 7468 3325 756 354 1797 6550 468 14576 3536 2106 10811 1529 2697 5428 4688 3599 4698 5148 5003 4920 4881 4370 4223 4690 4183 5141 6190 5226 4119 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.01 0.06 -0.05 -0.02 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.17 0.10 0.13 0.17 0.03 -0.00 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.02 -0.04 -0.00 -0.07 -0.03 0.00 0.04 0.10 -0.01 0.17 0.10 -0.02 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.06 0.05 -0.04 0.08 -0.01 -0.01 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages