Detailed information of deep learning profile BP000056.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000056.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPF
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.20 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.09 0.07 0.19 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4524 4083 3843 5336 6339 4893 3914 4571 3746 4097 4722 5011 4743 4914 4386 3125 4292 5347 2189 1073 11549 1754 3285 15377 337 6120 2038 541 1080 3840 6797 2395 3380 6283 3693 5351 4245 5047 4520 4434 4887 5585 4464 4908 5066 5036 5058 5018 4931 4864 ]
C [ 4733 3799 5160 5946 4443 4316 3680 4928 7783 6852 6084 5502 5299 4864 5578 6709 4565 2541 14634 17888 1540 10087 7532 532 121 207 806 331 1892 12336 2286 9231 6150 4584 4403 4188 4246 5212 5829 6642 5824 4740 5215 4825 4803 4954 5008 4829 5073 5059 ]
G [ 5125 6540 6480 3937 4786 4740 4539 4709 3521 3827 4499 4719 4765 4171 4865 3235 6225 8197 1637 520 2962 7201 1955 2355 19151 13149 11278 18372 15092 1552 9137 5335 2743 5914 5251 4677 7516 5352 5355 4038 4245 5176 5435 5391 5304 4964 4892 5304 5417 5197 ]
T [ 5447 5407 4346 4610 4261 5880 7696 5621 4779 5053 4524 4597 5022 5880 5000 6760 4747 3744 1369 348 3778 787 7057 1565 220 353 5707 585 1765 2101 1609 2868 7556 3048 6482 5613 3822 4218 4125 4715 4873 4328 4715 4705 4656 4875 4871 4678 4408 4709 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.03 -0.03 0.02 -0.02 -0.04 0.04 -0.03 -0.03 0.11 -0.07 0.04 -0.07 -0.07 -0.06 -0.02 0.02 -0.03 -0.03 0.03 -0.03 0.01 -0.01 -0.00 ]
C [ 0.01 0.02 0.06 0.04 -0.02 0.14 0.21 -0.03 0.13 0.06 -0.03 -0.04 -0.09 -0.02 -0.06 -0.03 0.14 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.06 -0.04 -0.05 0.07 0.06 -0.03 0.03 0.22 0.15 0.12 0.19 0.14 -0.03 0.13 0.04 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.08 0.07 -0.04 -0.06 -0.09 0.01 -0.06 -0.01 -0.03 -0.07 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages