Detailed information of deep learning profile BP000321.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in vagina using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000321.1
Cell line/tissue: vagina
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR606TNN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3894 3819 3941 4860 4644 4389 4191 4317 3444 4526 4403 3365 3596 3143 5077 6064 1910 7089 1671 1006 1602 1500 292 5994 178 112 860 6540 461 2130 132 1050 3174 4080 6813 4687 5413 4400 4022 3884 4623 4268 5352 7864 5592 3432 3957 3853 4976 5002 ]
C [ 4399 4449 4743 3795 3746 4274 4615 4419 4593 2607 2398 3981 4471 7194 3708 4571 4790 1853 5244 7978 723 14228 16176 9331 9898 16630 1389 1155 5693 2311 120 1028 7259 5757 2460 4151 3284 3635 3798 3581 2760 2464 3730 3532 4065 3898 2910 5923 5944 4217 ]
G [ 4326 4317 4022 3807 3641 3753 3916 4769 3317 5453 6754 5659 4663 2978 3126 3365 4092 5652 8312 1057 12096 785 238 709 163 83 466 6640 9975 737 16402 13320 1759 3461 5410 4146 3728 4386 4775 5399 6102 7273 4065 2591 3132 3385 5464 4228 2831 4054 ]
T [ 4448 4482 4361 4605 5036 4651 4345 3562 5713 4481 3512 4062 4337 3752 5156 3067 6275 2473 1840 7026 2646 554 361 1033 6828 242 14352 2732 938 11889 413 1669 4875 3769 2384 4083 4642 4646 4472 4203 3582 3062 3920 3080 4278 6352 4736 3063 3316 3794 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.07 -0.04 -0.04 0.04 -0.04 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.09 0.13 0.08 0.10 0.14 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.03 0.01 -0.04 -0.01 0.01 0.04 0.10 -0.02 0.14 0.09 -0.01 0.03 0.04 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.03 -0.04 -0.05 0.04 -0.04 0.07 -0.02 -0.03 0.03 -0.03 -0.00 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 812

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages