Detailed information of deep learning profile BP000321.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in vagina using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000321.1
Cell line/tissue: vagina
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR606TNN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3794 3316 3063 4736 6352 4278 3080 3920 3062 3582 4203 4472 4646 4642 4083 2384 3769 4875 1669 413 11889 938 2732 14352 242 6828 1033 361 554 2646 7026 1840 2473 6275 3067 5156 3752 4337 4062 3512 4481 5713 3562 4345 4651 5036 4605 4361 4482 4448 ]
C [ 4054 2831 4228 5464 3385 3132 2591 4065 7273 6102 5399 4775 4386 3728 4146 5410 3461 1759 13320 16402 737 9975 6640 466 83 163 709 238 785 12096 1057 8312 5652 4092 3365 3126 2978 4663 5659 6754 5453 3317 4769 3916 3753 3641 3807 4022 4317 4326 ]
G [ 4217 5944 5923 2910 3898 4065 3532 3730 2464 2760 3581 3798 3635 3284 4151 2460 5757 7259 1028 120 2311 5693 1155 1389 16630 9898 9331 16176 14228 723 7978 5244 1853 4790 4571 3708 7194 4471 3981 2398 2607 4593 4419 4615 4274 3746 3795 4743 4449 4399 ]
T [ 5002 4976 3853 3957 3432 5592 7864 5352 4268 4623 3884 4022 4400 5413 4687 6813 4080 3174 1050 132 2130 461 6540 860 112 178 5994 292 1500 1602 1006 1671 7089 1910 6064 5077 3143 3596 3365 4403 4526 3444 4317 4191 4389 4644 4860 3941 3819 3894 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.00 -0.03 0.03 -0.03 -0.02 0.07 -0.04 0.04 -0.05 -0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.04 0.03 -0.01 0.09 0.14 -0.02 0.10 0.04 0.01 -0.01 -0.04 0.01 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.14 0.10 0.08 0.13 0.09 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.04 0.04 -0.04 -0.04 -0.07 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 812

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages