Detailed information of deep learning profile BP000094.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in retinal pigment epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000094.1
Cell line/tissue: retinal pigment epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVI
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.08 0.06 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5154 4538 4288 5740 7147 5510 4433 5082 4236 4686 5288 5580 5304 5494 4748 3575 4898 6142 2409 1421 12400 2000 3603 16868 418 6359 2707 682 1434 4645 7138 2872 4110 6765 4151 5822 4774 5733 5005 5088 5490 6058 5083 5644 5654 5673 5562 5587 5492 5498 ]
C [ 5374 4429 5767 6792 5038 4827 4207 5510 8806 7671 6710 6043 6041 5369 6267 7647 5179 2902 16351 19777 1738 11110 8616 692 156 315 1107 533 2342 13026 2776 10056 6613 5220 4902 4738 4767 5666 6442 7091 6351 5294 5608 5383 5399 5403 5546 5563 5788 5620 ]
G [ 5679 7048 7229 4414 5309 5377 5076 5336 4022 4268 5009 5398 5245 4824 5583 3686 6882 9032 1977 552 3697 8138 2247 2792 21327 15018 12849 20194 16417 1986 10265 5909 3269 6639 6015 5401 8332 6033 6113 4703 4987 5855 6129 5934 5999 5664 5521 5851 5941 5774 ]
T [ 5985 6177 4908 5246 4698 6478 8476 6264 5128 5567 5185 5171 5602 6505 5594 7284 5233 4116 1455 442 4357 944 7726 1840 291 500 5529 783 1999 2535 2013 3355 8200 3568 7124 6231 4319 4760 4632 5310 5364 4985 5372 5231 5140 5452 5563 5191 4971 5300 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.09 -0.05 0.03 -0.05 -0.05 -0.05 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.16 -0.02 0.10 0.04 -0.02 -0.03 -0.07 -0.01 -0.04 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.03 0.06 0.04 -0.02 0.02 0.16 0.12 0.10 0.15 0.11 -0.01 0.10 0.03 -0.00 0.02 0.02 0.01 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.06 0.05 -0.03 -0.04 -0.06 0.01 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages