Detailed information of deep learning profile BP000095.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000095.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.12 -0.00 0.02 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.15 0.27 0.00 0.10 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.12 0.00 0.05 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.02 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.28 0.12 0.09 0.26 0.16 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.01 -0.01 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4815 4196 4097 5605 7325 5317 4021 4895 4031 4342 5171 5273 5280 5408 4741 3298 4707 5811 2136 815 13025 1604 3400 16684 281 7046 1856 488 932 3774 7567 2477 3414 6927 3882 5976 4539 5305 4912 4691 5247 6328 4602 5186 5658 5722 5429 5441 5374 5272 ]
C [ 5003 3966 5242 6569 4476 4341 3734 5177 8413 7214 6354 5745 5496 5025 5612 6915 4630 2558 15978 19661 1408 11268 8055 608 104 264 988 401 1768 13729 2224 10125 6400 5007 4449 4226 4360 5599 6287 7221 6416 4771 5627 5086 4876 4956 5039 5149 5425 5305 ]
G [ 5315 7085 7075 4072 4946 5057 4703 4856 3530 4003 4739 5079 4891 4455 5200 3357 6849 8888 1694 425 3355 7561 1946 2347 20596 13552 12070 19811 16603 1449 9784 5765 2759 6290 5533 4756 8207 5682 5540 4033 4173 5525 5706 5689 5438 5108 5074 5659 5601 5614 ]
T [ 6036 5922 4755 4923 4422 6454 8711 6241 5195 5610 4905 5072 5502 6281 5616 7599 4983 3912 1361 268 3381 736 7768 1530 188 307 6255 469 1866 2217 1594 2802 8596 2945 7305 6211 4063 4583 4430 5224 5333 4545 5234 5208 5197 5383 5627 4920 4769 4978 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.04 -0.03 0.02 -0.02 -0.06 0.05 -0.04 -0.03 0.14 -0.09 0.06 -0.10 -0.08 -0.09 -0.02 0.02 -0.03 -0.02 0.03 -0.03 0.01 -0.01 0.00 ]
C [ 0.02 0.02 0.04 0.08 0.06 -0.01 0.19 0.29 -0.02 0.18 0.09 -0.01 -0.03 -0.08 0.01 -0.04 -0.03 0.18 -0.01 0.10 0.06 0.05 0.02 0.02 0.02 0.03 ]
G [ 0.02 0.02 0.03 0.00 0.06 0.09 -0.04 -0.04 0.11 0.08 -0.02 0.04 0.28 0.20 0.17 0.27 0.20 -0.01 0.18 0.07 -0.01 0.04 0.04 0.02 0.06 0.02 ]
T [ 0.00 0.01 0.00 0.03 -0.02 -0.04 -0.07 -0.13 -0.05 -0.10 0.09 -0.06 -0.07 -0.11 0.02 -0.08 0.00 -0.04 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 894

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages