Detailed information of deep learning profile BP000239.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000239.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR372JWF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.14 0.20 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4526 4491 4473 4265 4357 5064 4943 4533 4581 4649 4171 4949 4851 3839 4062 3557 5823 6922 2274 8109 2149 1168 1668 1545 298 6282 242 215 1596 7246 783 3046 298 1576 3600 4545 6767 5057 5526 4818 4539 4492 4916 4800 5584 7386 5938 4192 4506 4516 ]
C [ 5071 4929 5025 5094 5212 4527 4437 5090 5270 5248 5093 3352 3116 4896 5232 7879 4184 4901 5578 2068 5641 9337 785 16202 18448 10744 11390 18548 2137 1794 6970 3255 361 1642 8052 6048 3243 4778 4162 4592 4688 4357 3772 3423 4563 4461 4565 4534 3928 5976 ]
G [ 4915 4854 4821 4901 4691 4574 4402 4483 4498 5238 4059 5997 6990 6143 5057 3551 3715 4145 4647 6247 9660 1101 13745 956 110 791 191 88 561 6887 9826 1266 17553 13799 2530 4225 6259 5042 4596 4976 5321 5708 6392 7173 4802 3646 4044 4206 5749 4903 ]
T [ 4713 4951 4906 4965 4965 5060 5443 5119 4876 4090 5902 4927 4268 4347 4874 4238 5503 3257 6726 2801 1775 7619 3027 522 369 1408 7402 374 14931 3298 1646 11658 1013 2208 5043 4407 2956 4348 4941 4839 4677 4668 4145 3829 4276 3732 4678 6293 5042 3830 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.03 0.01 -0.05 0.04 -0.09 -0.04 -0.03 0.07 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.01 0.06 0.16 -0.03 0.16 0.20 0.12 0.15 0.21 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.04 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.06 0.09 -0.01 0.16 -0.03 -0.04 0.01 -0.07 -0.02 0.01 0.07 0.14 -0.01 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.03 0.04 -0.03 -0.03 0.03 -0.01 -0.06 -0.05 -0.08 0.06 -0.05 0.10 -0.02 -0.03 0.05 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 488

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 344

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 61

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages