Detailed information of deep learning profile BP000239.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000239.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR372JWF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.20 0.14 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3830 5042 6293 4678 3732 4276 3829 4145 4668 4677 4839 4941 4348 2956 4407 5043 2208 1013 11658 1646 3298 14931 374 7402 1408 369 522 3027 7619 1775 2801 6726 3257 5503 4238 4874 4347 4268 4927 5902 4090 4876 5119 5443 5060 4965 4965 4906 4951 4713 ]
C [ 4903 5749 4206 4044 3646 4802 7173 6392 5708 5321 4976 4596 5042 6259 4225 2530 13799 17553 1266 9826 6887 561 88 191 791 110 956 13745 1101 9660 6247 4647 4145 3715 3551 5057 6143 6990 5997 4059 5238 4498 4483 4402 4574 4691 4901 4821 4854 4915 ]
G [ 5976 3928 4534 4565 4461 4563 3423 3772 4357 4688 4592 4162 4778 3243 6048 8052 1642 361 3255 6970 1794 2137 18548 11390 10744 18448 16202 785 9337 5641 2068 5578 4901 4184 7879 5232 4896 3116 3352 5093 5248 5270 5090 4437 4527 5212 5094 5025 4929 5071 ]
T [ 4516 4506 4192 5938 7386 5584 4800 4916 4492 4539 4818 5526 5057 6767 4545 3600 1576 298 3046 783 7246 1596 215 242 6282 298 1545 1668 1168 2149 8109 2274 6922 5823 3557 4062 3839 4851 4949 4171 4649 4581 4533 4943 5064 4357 4265 4473 4491 4526 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.05 -0.03 -0.02 0.10 -0.05 0.06 -0.08 -0.05 -0.06 -0.01 0.03 -0.03 -0.03 0.04 -0.03 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.01 0.14 0.07 0.01 -0.02 -0.07 0.01 -0.04 -0.03 0.16 -0.01 0.09 0.06 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.04 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.21 0.15 0.12 0.20 0.16 -0.03 0.16 0.06 -0.01 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.07 -0.03 -0.04 -0.09 0.04 -0.05 0.01 -0.03 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 488

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 344

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 61

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages