Detailed information of deep learning profile BP000230.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000230.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR350NBQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4495 4271 4348 5022 4859 4646 4638 4640 4205 4943 4775 3890 4090 3576 5796 6703 2572 7940 2402 1345 1869 1691 346 5768 302 201 1594 6971 816 3445 251 1469 3677 4616 6669 4985 5682 4908 4593 4550 4981 4750 5537 7577 5893 4085 4508 4397 5317 5437 ]
C [ 5286 5474 5418 4902 4889 5449 5525 5629 5266 3880 3619 5298 5467 8035 4440 5387 5866 2412 5585 9611 1202 15928 18836 11370 12714 19113 2270 2029 7472 3140 337 1853 8339 6260 3354 4984 4303 4740 4883 4533 3984 3576 4914 4692 4907 4799 4048 6343 6561 5058 ]
G [ 5100 5128 4911 4845 4794 4655 4785 5339 4423 6092 7109 6324 5190 3994 4077 4301 4791 6424 9766 1644 13314 1454 179 969 252 119 666 7463 9807 1533 18469 14284 2615 4508 6735 5482 4940 5283 5524 6043 6800 7616 4996 3713 4299 4439 6114 5197 3955 4812 ]
T [ 4921 4929 5125 5033 5260 5052 4854 4194 5908 4887 4299 4290 5055 4197 5489 3411 6573 3026 2049 7202 3417 729 441 1695 6534 369 15272 3339 1707 11684 745 2196 5171 4418 3044 4351 4877 4871 4802 4676 4037 3860 4355 3820 4703 6479 5132 3865 3969 4495 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.00 -0.04 0.02 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.02 0.14 0.18 0.11 0.14 0.19 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 0.00 -0.07 -0.03 -0.01 0.06 0.12 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.03 -0.02 -0.06 -0.06 -0.07 0.05 -0.05 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 291

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 171

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages