Detailed information of deep learning profile BP000230.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000230.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR350NBQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4495 3969 3865 5132 6479 4703 3820 4355 3860 4037 4676 4802 4871 4877 4351 3044 4418 5171 2196 745 11684 1707 3339 15272 369 6534 1695 441 729 3417 7202 2049 3026 6573 3411 5489 4197 5055 4290 4299 4887 5908 4194 4854 5052 5260 5033 5125 4929 4921 ]
C [ 4812 3955 5197 6114 4439 4299 3713 4996 7616 6800 6043 5524 5283 4940 5482 6735 4508 2615 14284 18469 1533 9807 7463 666 119 252 969 179 1454 13314 1644 9766 6424 4791 4301 4077 3994 5190 6324 7109 6092 4423 5339 4785 4655 4794 4845 4911 5128 5100 ]
G [ 5058 6561 6343 4048 4799 4907 4692 4914 3576 3984 4533 4883 4740 4303 4984 3354 6260 8339 1853 337 3140 7472 2029 2270 19113 12714 11370 18836 15928 1202 9611 5585 2412 5866 5387 4440 8035 5467 5298 3619 3880 5266 5629 5525 5449 4889 4902 5418 5474 5286 ]
T [ 5437 5317 4397 4508 4085 5893 7577 5537 4750 4981 4550 4593 4908 5682 4985 6669 4616 3677 1469 251 3445 816 6971 1594 201 302 5768 346 1691 1869 1345 2402 7940 2572 6703 5796 3576 4090 3890 4775 4943 4205 4640 4638 4646 4859 5022 4348 4271 4495 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.05 0.05 -0.07 -0.06 -0.06 -0.02 0.03 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.12 0.06 -0.01 -0.03 -0.07 0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.19 0.14 0.11 0.18 0.14 -0.02 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.02 -0.04 0.00 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 291

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 171

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages