Detailed information of deep learning profile BP000224.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000224.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR331OGX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.04 0.11 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3703 3606 3725 4971 4529 4189 4079 4139 3203 4370 4197 3212 3344 2964 4883 6048 1600 7126 1337 648 1306 1277 137 6491 118 70 648 6460 417 1681 99 952 2904 3945 7484 4670 5520 4262 3651 3595 4631 4334 5476 8370 5887 3161 3941 3665 4990 5081 ]
C [ 4797 4978 5371 4011 3829 4539 4936 4835 5045 2349 2186 3970 4785 8042 3804 5021 5145 1829 5488 9116 514 15328 17197 9975 10295 17345 1134 1219 5562 2637 103 914 8286 6949 2387 4684 3574 3886 4077 3798 2912 2511 4022 3900 4254 4435 2938 6548 6720 4569 ]
G [ 4775 4612 4353 4113 3921 4253 4262 5373 3276 6392 7871 6436 5236 3008 3380 3638 4426 6444 9171 694 13540 616 76 531 108 62 454 7424 10896 544 17166 14279 1626 3347 5686 4199 3849 4808 5476 5978 6789 8011 4304 2537 3205 3650 6112 4702 2964 4446 ]
T [ 4351 4430 4177 4531 5347 4645 4349 3279 6102 4515 3372 4008 4261 3612 5559 2919 6455 2227 1630 7168 2266 405 216 629 7105 149 15390 2523 751 12764 258 1481 4810 3385 2069 4073 4683 4670 4422 4255 3294 2770 3824 2819 4280 6380 4635 2711 2952 3530 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.06 -0.03 -0.04 0.04 -0.04 -0.03 -0.05 -0.02 -0.01 -0.00 0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.08 0.11 0.06 0.08 0.11 0.02 -0.01 0.03 0.06 -0.02 -0.01 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.04 -0.02 0.08 -0.02 -0.03 0.00 -0.04 -0.01 0.00 0.04 0.07 -0.03 0.12 0.08 -0.01 0.03 0.04 0.02 0.01 0.02 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.02 -0.03 -0.05 0.03 -0.04 0.06 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages