Detailed information of deep learning profile BP000224.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000224.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR331OGX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.11 0.04 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3530 2952 2711 4635 6380 4280 2819 3824 2770 3294 4255 4422 4670 4683 4073 2069 3385 4810 1481 258 12764 751 2523 15390 149 7105 629 216 405 2266 7168 1630 2227 6455 2919 5559 3612 4261 4008 3372 4515 6102 3279 4349 4645 5347 4531 4177 4430 4351 ]
C [ 4446 2964 4702 6112 3650 3205 2537 4304 8011 6789 5978 5476 4808 3849 4199 5686 3347 1626 14279 17166 544 10896 7424 454 62 108 531 76 616 13540 694 9171 6444 4426 3638 3380 3008 5236 6436 7871 6392 3276 5373 4262 4253 3921 4113 4353 4612 4775 ]
G [ 4569 6720 6548 2938 4435 4254 3900 4022 2511 2912 3798 4077 3886 3574 4684 2387 6949 8286 914 103 2637 5562 1219 1134 17345 10295 9975 17197 15328 514 9116 5488 1829 5145 5021 3804 8042 4785 3970 2186 2349 5045 4835 4936 4539 3829 4011 5371 4978 4797 ]
T [ 5081 4990 3665 3941 3161 5887 8370 5476 4334 4631 3595 3651 4262 5520 4670 7484 3945 2904 952 99 1681 417 6460 648 70 118 6491 137 1277 1306 648 1337 7126 1600 6048 4883 2964 3344 3212 4197 4370 3203 4139 4079 4189 4529 4971 3725 3606 3703 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.06 -0.04 0.03 -0.05 -0.03 -0.02 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.04 0.03 -0.01 0.08 0.12 -0.03 0.07 0.04 0.00 -0.01 -0.04 0.00 -0.03 -0.02 0.08 -0.02 0.04 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.01 -0.02 0.06 0.03 -0.01 0.02 0.11 0.08 0.06 0.11 0.08 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.05 -0.03 -0.04 0.04 -0.04 -0.03 -0.06 0.01 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages