Detailed information of deep learning profile BP000218.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in RWPE1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000218.1
Cell line/tissue: RWPE1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR303GFI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.16 0.10 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4532 4003 3802 5501 7041 5072 3732 4618 3799 4201 4820 5023 5162 5180 4488 2937 4427 5572 1997 499 13122 1298 3187 15984 295 7829 1147 332 516 2878 8065 2009 2769 7153 3628 6047 4386 5076 4711 4270 5209 6507 4241 5090 5455 5837 5286 5237 5288 5150 ]
C [ 4487 3416 4801 5868 3882 3628 3166 4639 7674 6626 5959 5511 4979 4507 4889 6128 4068 2208 14710 18802 1069 10911 7077 619 112 181 773 135 745 14370 1000 10182 6287 4707 3973 3647 3482 5261 6225 7371 6137 4029 5268 4502 4425 4303 4465 4627 4905 4817 ]
G [ 4789 6618 6458 3576 4581 4543 4257 4267 3113 3444 4256 4373 4281 3862 4817 3007 6324 8231 1530 246 2746 6814 1695 1864 19150 11508 10442 18951 16731 665 9571 5505 1859 5647 5029 4031 8148 5102 4743 2960 3081 4973 5136 5237 4806 4240 4378 5191 5059 5045 ]
T [ 5901 5672 4648 4764 4205 6466 8554 6185 5123 5438 4674 4802 5287 6160 5515 7637 4890 3698 1472 162 2772 686 7750 1242 152 191 7347 291 1717 1796 1073 2013 8794 2202 7079 5984 3693 4270 4030 5108 5282 4200 5064 4880 5023 5329 5580 4654 4457 4697 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.05 -0.07 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.00 0.11 0.18 -0.02 0.11 0.05 0.00 -0.02 -0.05 0.01 -0.03 -0.03 0.13 -0.03 0.06 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.03 0.06 -0.02 -0.01 0.07 0.05 -0.01 0.02 0.17 0.12 0.09 0.17 0.12 -0.03 0.13 0.04 -0.00 0.03 0.03 0.00 0.03 0.01 ]
T [ 0.00 -0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.06 0.06 -0.03 -0.03 -0.07 0.03 -0.04 0.00 -0.02 -0.06 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 862

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages