Detailed information of deep learning profile BP000218.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in RWPE1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000218.1
Cell line/tissue: RWPE1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR303GFI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.10 0.16 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4697 4457 4654 5580 5329 5023 4880 5064 4200 5282 5108 4030 4270 3693 5984 7079 2202 8794 2013 1073 1796 1717 291 7347 191 152 1242 7750 686 2772 162 1472 3698 4890 7637 5515 6160 5287 4802 4674 5438 5123 6185 8554 6466 4205 4764 4648 5672 5901 ]
C [ 5045 5059 5191 4378 4240 4806 5237 5136 4973 3081 2960 4743 5102 8148 4031 5029 5647 1859 5505 9571 665 16731 18951 10442 11508 19150 1864 1695 6814 2746 246 1530 8231 6324 3007 4817 3862 4281 4373 4256 3444 3113 4267 4257 4543 4581 3576 6458 6618 4789 ]
G [ 4817 4905 4627 4465 4303 4425 4502 5268 4029 6137 7371 6225 5261 3482 3647 3973 4707 6287 10182 1000 14370 745 135 773 181 112 619 7077 10911 1069 18802 14710 2208 4068 6128 4889 4507 4979 5511 5959 6626 7674 4639 3166 3628 3882 5868 4801 3416 4487 ]
T [ 5150 5288 5237 5286 5837 5455 5090 4241 6507 5209 4270 4711 5076 4386 6047 3628 7153 2769 2009 8065 2878 516 332 1147 7829 295 15984 3187 1298 13122 499 1997 5572 4427 2937 4488 5180 5162 5023 4820 4201 3799 4618 3732 5072 7041 5501 3802 4003 4532 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.06 -0.02 0.00 -0.04 0.03 -0.07 -0.03 -0.03 0.06 -0.06 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.03 0.00 0.03 0.03 -0.00 0.04 0.13 -0.03 0.12 0.17 0.09 0.12 0.17 0.02 -0.01 0.05 0.07 -0.01 -0.02 0.06 0.03 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.06 -0.03 0.13 -0.03 -0.03 0.01 -0.05 -0.02 0.00 0.05 0.11 -0.02 0.18 0.11 -0.00 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.07 0.05 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 862

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages