Detailed information of deep learning profile BP000205.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000205.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR265PFQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3901 3769 3899 4502 4237 4080 4024 4177 3647 4328 4309 3381 3642 3151 5005 5729 2095 7053 1907 1074 1601 1377 242 5982 244 146 1319 5974 668 2772 184 1241 3131 4056 6042 4530 4929 4350 4054 3923 4393 4297 4806 6674 5195 3463 3960 3858 4576 4831 ]
C [ 4272 4403 4386 3895 3950 4403 4476 4451 4313 2980 2834 4290 4405 6709 3641 4414 4969 1941 4867 7983 711 14172 16021 8438 10027 16202 1649 1575 6207 2288 236 1414 6927 5256 2755 4016 3405 3740 3845 3747 3159 2902 3902 3769 4002 4010 3236 5148 5524 4121 ]
G [ 4140 4170 4028 3901 3818 3753 3894 4440 3581 5057 5895 5196 4345 3118 3175 3501 3871 5214 8104 1060 11683 679 127 849 238 89 488 6461 8462 1125 15687 12240 2072 3602 5295 4348 4044 4280 4514 4982 5506 6253 4112 2963 3301 3534 5013 4338 3086 3905 ]
T [ 4397 4368 4397 4412 4705 4474 4316 3642 5169 4345 3672 3843 4318 3732 4889 3066 5775 2502 1832 6593 2715 482 320 1441 6201 273 13254 2700 1373 10525 603 1815 4580 3796 2618 3816 4332 4340 4297 4058 3652 3258 3890 3304 4212 5703 4501 3366 3524 3853 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.04 0.02 -0.08 -0.05 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.02 -0.00 0.05 0.12 -0.02 0.12 0.17 0.10 0.13 0.18 0.02 -0.01 0.06 0.08 -0.02 -0.01 0.06 0.04 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.02 -0.03 0.01 -0.05 -0.01 0.01 0.06 0.12 -0.01 0.19 0.12 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.05 0.09 -0.03 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 267

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages