Detailed information of deep learning profile BP000205.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000205.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR265PFQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3853 3524 3366 4501 5703 4212 3304 3890 3258 3652 4058 4297 4340 4332 3816 2618 3796 4580 1815 603 10525 1373 2700 13254 273 6201 1441 320 482 2715 6593 1832 2502 5775 3066 4889 3732 4318 3843 3672 4345 5169 3642 4316 4474 4705 4412 4397 4368 4397 ]
C [ 3905 3086 4338 5013 3534 3301 2963 4112 6253 5506 4982 4514 4280 4044 4348 5295 3602 2072 12240 15687 1125 8462 6461 488 89 238 849 127 679 11683 1060 8104 5214 3871 3501 3175 3118 4345 5196 5895 5057 3581 4440 3894 3753 3818 3901 4028 4170 4140 ]
G [ 4121 5524 5148 3236 4010 4002 3769 3902 2902 3159 3747 3845 3740 3405 4016 2755 5256 6927 1414 236 2288 6207 1575 1649 16202 10027 8438 16021 14172 711 7983 4867 1941 4969 4414 3641 6709 4405 4290 2834 2980 4313 4451 4476 4403 3950 3895 4386 4403 4272 ]
T [ 4831 4576 3858 3960 3463 5195 6674 4806 4297 4393 3923 4054 4350 4929 4530 6042 4056 3131 1241 184 2772 668 5974 1319 146 244 5982 242 1377 1601 1074 1907 7053 2095 5729 5005 3151 3642 3381 4309 4328 3647 4177 4024 4080 4237 4502 3899 3769 3901 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.03 0.09 -0.05 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.12 0.19 -0.01 0.12 0.06 0.01 -0.01 -0.05 0.01 -0.03 -0.02 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.04 0.06 -0.01 -0.02 0.08 0.06 -0.01 0.02 0.18 0.13 0.10 0.17 0.12 -0.02 0.12 0.05 -0.00 0.02 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.05 -0.08 0.02 -0.04 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 267

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages