Detailed information of deep learning profile BP000203.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in smooth muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000203.1
Cell line/tissue: smooth muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR261VAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.16 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4761 4174 3905 5633 7297 5288 3948 4815 3951 4432 5057 5234 5117 5416 4656 3204 4662 5802 2136 645 13372 1611 3278 17415 294 7181 1829 534 914 3825 7581 2508 3465 7002 3906 5900 4630 5502 4806 4722 5497 6278 4728 5296 5585 5614 5560 5431 5311 5334 ]
C [ 5002 3924 5356 6644 4557 4376 3729 5189 8640 7388 6564 6003 5636 5051 5807 7173 4847 2582 16126 20072 1261 11069 8389 497 76 149 783 280 1331 14063 1874 10390 6639 5008 4346 4353 4203 5509 6380 7338 6192 4828 5640 5136 4868 5107 5056 5205 5421 5402 ]
G [ 5345 7030 7162 4026 4934 5045 4722 4950 3536 4053 4831 4954 4884 4445 5299 3368 6684 8873 1546 290 3048 7822 1762 1967 20672 13636 12359 19922 17174 1141 10149 5640 2474 6243 5632 4819 8359 5762 5710 3941 4230 5601 5738 5766 5744 5126 5069 5685 5747 5519 ]
T [ 6106 6086 4791 4911 4426 6505 8815 6260 5087 5341 4762 5023 5577 6302 5452 7469 5021 3957 1406 207 3533 712 7785 1335 172 248 6243 478 1795 2185 1610 2676 8636 2961 7330 6142 4022 4441 4318 5213 5295 4507 5108 5016 5017 5367 5529 4893 4735 4959 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.12 0.19 -0.03 0.12 0.05 -0.01 -0.03 -0.08 -0.01 -0.05 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.02 0.06 0.05 -0.02 0.02 0.18 0.14 0.11 0.17 0.12 -0.02 0.12 0.04 -0.01 0.02 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.09 -0.02 -0.06 0.06 -0.04 -0.04 -0.08 0.02 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 377

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 270

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages