Detailed information of deep learning profile BP000203.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in smooth muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000203.1
Cell line/tissue: smooth muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR261VAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.16 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4959 4735 4893 5529 5367 5017 5016 5108 4507 5295 5213 4318 4441 4022 6142 7330 2961 8636 2676 1610 2185 1795 478 6243 248 172 1335 7785 712 3533 207 1406 3957 5021 7469 5452 6302 5577 5023 4762 5341 5087 6260 8815 6505 4426 4911 4791 6086 6106 ]
C [ 5519 5747 5685 5069 5126 5744 5766 5738 5601 4230 3941 5710 5762 8359 4819 5632 6243 2474 5640 10149 1141 17174 19922 12359 13636 20672 1967 1762 7822 3048 290 1546 8873 6684 3368 5299 4445 4884 4954 4831 4053 3536 4950 4722 5045 4934 4026 7162 7030 5345 ]
G [ 5402 5421 5205 5056 5107 4868 5136 5640 4828 6192 7338 6380 5509 4203 4353 4346 5008 6639 10390 1874 14063 1331 280 783 149 76 497 8389 11069 1261 20072 16126 2582 4847 7173 5807 5051 5636 6003 6564 7388 8640 5189 3729 4376 4557 6644 5356 3924 5002 ]
T [ 5334 5311 5431 5560 5614 5585 5296 4728 6278 5497 4722 4806 5502 4630 5900 3906 7002 3465 2508 7581 3825 914 534 1829 7181 294 17415 3278 1611 13372 645 2136 5802 4662 3204 4656 5416 5117 5234 5057 4432 3951 4815 3948 5288 7297 5633 3905 4174 4761 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.02 -0.08 -0.04 -0.04 0.06 -0.06 -0.02 -0.09 -0.04 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.02 -0.01 0.04 0.12 -0.02 0.12 0.17 0.11 0.14 0.18 0.02 -0.02 0.05 0.06 -0.02 -0.03 0.05 0.04 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.05 -0.01 -0.08 -0.03 -0.01 0.05 0.12 -0.03 0.19 0.12 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 377

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 270

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages