Detailed information of deep learning profile BP000202.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000202.1
Cell line/tissue: neural progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR260FAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.13 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.07 0.05 0.12 0.07 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3978 3473 3338 4966 6294 4483 3328 4079 3268 3719 4329 4375 4436 4535 3943 2846 3812 5125 1756 821 10729 1529 2867 14124 274 4968 1724 492 1202 3715 5717 2511 3231 5577 3495 4767 3953 4725 4116 4212 4655 5000 4154 4612 4546 4533 4555 4662 4417 4440 ]
C [ 4240 3210 4708 5706 3888 3795 3202 4499 7756 6615 5518 5097 4881 4447 5017 6068 4408 2115 13725 16598 1329 9264 6922 541 106 225 795 491 1974 10675 2373 7979 5346 4120 3822 3846 3734 4646 5221 5771 5022 4256 4653 4349 4313 4424 4507 4387 4642 4550 ]
G [ 4526 6200 6115 3297 4178 4307 4019 4092 2914 3178 4043 4386 4027 3808 4395 2919 5722 7337 1435 324 2506 6509 1571 2041 17476 12562 11158 16443 13193 1644 8153 4824 2761 5320 4837 4447 6787 4748 4952 3680 3984 4735 4868 4792 4904 4464 4389 4832 4919 4731 ]
T [ 5287 5148 3870 4062 3671 5446 7482 5361 4093 4519 4141 4173 4687 5241 4676 6198 4089 3454 1115 288 3467 729 6671 1325 175 276 4354 605 1662 1997 1788 2717 6693 3014 5877 4971 3557 3912 3742 4368 4370 4040 4356 4278 4268 4610 4580 4150 4053 4310 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.04 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.03 -0.02 0.09 0.14 -0.02 0.09 0.04 -0.01 -0.03 -0.06 -0.01 -0.03 -0.02 0.08 -0.00 0.04 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.02 0.02 0.14 0.10 0.08 0.13 0.09 -0.01 0.08 0.02 -0.01 0.02 0.01 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.05 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 853

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 106

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages