Detailed information of deep learning profile BP000202.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000202.1
Cell line/tissue: neural progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR260FAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.07 0.12 0.05 0.07 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.13 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4310 4053 4150 4580 4610 4268 4278 4356 4040 4370 4368 3742 3912 3557 4971 5877 3014 6693 2717 1788 1997 1662 605 4354 276 175 1325 6671 729 3467 288 1115 3454 4089 6198 4676 5241 4687 4173 4141 4519 4093 5361 7482 5446 3671 4062 3870 5148 5287 ]
C [ 4731 4919 4832 4389 4464 4904 4792 4868 4735 3984 3680 4952 4748 6787 4447 4837 5320 2761 4824 8153 1644 13193 16443 11158 12562 17476 2041 1571 6509 2506 324 1435 7337 5722 2919 4395 3808 4027 4386 4043 3178 2914 4092 4019 4307 4178 3297 6115 6200 4526 ]
G [ 4550 4642 4387 4507 4424 4313 4349 4653 4256 5022 5771 5221 4646 3734 3846 3822 4120 5346 7979 2373 10675 1974 491 795 225 106 541 6922 9264 1329 16598 13725 2115 4408 6068 5017 4447 4881 5097 5518 6615 7756 4499 3202 3795 3888 5706 4708 3210 4240 ]
T [ 4440 4417 4662 4555 4533 4546 4612 4154 5000 4655 4212 4116 4725 3953 4767 3495 5577 3231 2511 5717 3715 1202 492 1724 4968 274 14124 2867 1529 10729 821 1756 5125 3812 2846 3943 4535 4436 4375 4329 3719 3268 4079 3328 4483 6294 4966 3338 3473 3978 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.05 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.01 0.02 -0.01 0.02 0.08 -0.01 0.09 0.13 0.08 0.10 0.14 0.02 -0.02 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.04 -0.00 0.08 -0.02 -0.03 -0.01 -0.06 -0.03 -0.01 0.04 0.09 -0.02 0.14 0.09 -0.02 0.03 0.04 0.01 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.04 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 853

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 106

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages