Detailed information of deep learning profile BP000196.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in hepatocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000196.1
Cell line/tissue: hepatocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR252QYR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.11 0.04 0.05 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4551 4269 4344 4881 4779 4441 4604 4629 4265 4800 4710 3902 4131 3652 5568 6593 2660 7762 2522 1451 1909 1671 382 5508 288 233 1689 6654 826 3680 247 1449 3633 4548 6352 4844 5597 4920 4478 4329 4813 4736 5553 7311 5620 4130 4375 4279 5264 5365 ]
C [ 5196 5401 5275 4771 4811 5324 5414 5518 5256 3954 3636 5275 5263 7780 4489 5204 5874 2413 5146 9724 1200 15536 18441 11189 12569 18714 2458 2166 7435 3179 374 1823 8048 6084 3302 4904 4287 4661 4852 4512 3910 3487 4690 4671 4732 4762 4119 6344 6412 5061 ]
G [ 4919 5054 4960 4771 4761 4727 4799 5179 4397 5862 6907 6046 5102 4070 4050 4290 4772 6171 9734 1760 12659 1494 208 851 198 134 673 7448 9551 1460 17939 14071 2652 4541 6670 5501 4829 5243 5386 6053 6653 7484 4914 3685 4317 4411 5933 5068 3873 4726 ]
T [ 4830 4772 4917 5073 5145 5004 4679 4170 5578 4880 4243 4273 5000 3994 5389 3409 6190 3150 2094 6561 3728 795 465 1948 6441 415 14676 3228 1684 11177 936 2153 5163 4323 3172 4247 4783 4672 4780 4602 4120 3789 4339 3829 4827 6193 5069 3805 3947 4344 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.02 0.02 -0.05 -0.02 -0.02 0.04 -0.04 -0.01 -0.05 -0.02 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.01 0.09 0.12 0.07 0.09 0.13 0.02 -0.01 0.03 0.05 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.09 -0.02 -0.04 -0.01 -0.05 -0.02 -0.00 0.04 0.08 -0.01 0.12 0.08 -0.01 0.02 0.03 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.03 -0.04 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 202

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages