Detailed information of deep learning profile BP000196.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in hepatocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000196.1
Cell line/tissue: hepatocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR252QYR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.05 0.04 0.11 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4344 3947 3805 5069 6193 4827 3829 4339 3789 4120 4602 4780 4672 4783 4247 3172 4323 5163 2153 936 11177 1684 3228 14676 415 6441 1948 465 795 3728 6561 2094 3150 6190 3409 5389 3994 5000 4273 4243 4880 5578 4170 4679 5004 5145 5073 4917 4772 4830 ]
C [ 4726 3873 5068 5933 4411 4317 3685 4914 7484 6653 6053 5386 5243 4829 5501 6670 4541 2652 14071 17939 1460 9551 7448 673 134 198 851 208 1494 12659 1760 9734 6171 4772 4290 4050 4070 5102 6046 6907 5862 4397 5179 4799 4727 4761 4771 4960 5054 4919 ]
G [ 5061 6412 6344 4119 4762 4732 4671 4690 3487 3910 4512 4852 4661 4287 4904 3302 6084 8048 1823 374 3179 7435 2166 2458 18714 12569 11189 18441 15536 1200 9724 5146 2413 5874 5204 4489 7780 5263 5275 3636 3954 5256 5518 5414 5324 4811 4771 5275 5401 5196 ]
T [ 5365 5264 4279 4375 4130 5620 7311 5553 4736 4813 4329 4478 4920 5597 4844 6352 4548 3633 1449 247 3680 826 6654 1689 233 288 5508 382 1671 1909 1451 2522 7762 2660 6593 5568 3652 4131 3902 4710 4800 4265 4629 4604 4441 4779 4881 4344 4269 4551 ]

Hypothetical CWM

A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.04 -0.03 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.01 0.08 0.12 -0.01 0.08 0.04 -0.00 -0.02 -0.05 -0.01 -0.04 -0.02 0.09 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.03 -0.01 0.02 0.13 0.09 0.07 0.12 0.09 -0.01 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.05 -0.01 -0.04 0.04 -0.02 -0.02 -0.05 0.02 -0.02 0.01 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 476

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 385

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 202

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 35

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 21

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages