Detailed information of deep learning profile BP000194.1

  1. Home
  2. Deep Learning Profile > BP000194.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000194.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR249JOH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4402 4063 3864 5114 6240 4787 3811 4490 3764 4132 4703 4763 4716 4856 4347 3074 4293 5267 2280 885 11455 1795 3209 14711 390 6612 1590 395 612 3319 6925 1971 2914 6418 3518 5349 4133 4974 4423 4227 4857 5666 4225 4793 5081 5209 4953 4968 4883 4797 ]
C [ 4731 3830 4913 5640 4317 4104 3713 4799 7091 6402 5778 5362 5115 4812 5211 6334 4263 2554 13789 17537 1600 9682 6892 663 142 196 796 140 1238 13289 1475 10048 6241 4720 4092 3869 3816 5144 5960 6766 5817 4428 5155 4641 4501 4610 4732 4817 4949 4898 ]
G [ 4857 6163 6128 4014 4576 4563 4516 4477 3616 3843 4350 4684 4598 4216 4769 3277 6008 7904 1745 567 2870 7023 2048 2327 18584 12275 10807 18471 15838 953 9675 4992 2039 5591 4893 4331 7741 5103 5039 3543 3669 5061 5237 5234 5218 4692 4768 5120 5181 5068 ]
T [ 5344 5278 4429 4566 4201 5880 7294 5568 4863 4957 4503 4525 4905 5450 5007 6649 4770 3609 1520 345 3409 834 7185 1633 218 251 6141 328 1646 1773 1259 2323 8140 2605 6831 5785 3644 4113 3912 4798 4991 4179 4717 4666 4534 4823 4881 4429 4321 4571 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.04 -0.00 -0.02 -0.06 -0.01 -0.04 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.06 0.05 -0.01 0.02 0.17 0.11 0.10 0.15 0.12 -0.03 0.11 0.03 -0.01 0.02 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.00 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.06 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 77

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages