Detailed information of deep learning profile BP000194.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000194.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR249JOH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4571 4321 4429 4881 4823 4534 4666 4717 4179 4991 4798 3912 4113 3644 5785 6831 2605 8140 2323 1259 1773 1646 328 6141 251 218 1633 7185 834 3409 345 1520 3609 4770 6649 5007 5450 4905 4525 4503 4957 4863 5568 7294 5880 4201 4566 4429 5278 5344 ]
C [ 5068 5181 5120 4768 4692 5218 5234 5237 5061 3669 3543 5039 5103 7741 4331 4893 5591 2039 4992 9675 953 15838 18471 10807 12275 18584 2327 2048 7023 2870 567 1745 7904 6008 3277 4769 4216 4598 4684 4350 3843 3616 4477 4516 4563 4576 4014 6128 6163 4857 ]
G [ 4898 4949 4817 4732 4610 4501 4641 5155 4428 5817 6766 5960 5144 3816 3869 4092 4720 6241 10048 1475 13289 1238 140 796 196 142 663 6892 9682 1600 17537 13789 2554 4263 6334 5211 4812 5115 5362 5778 6402 7091 4799 3713 4104 4317 5640 4913 3830 4731 ]
T [ 4797 4883 4968 4953 5209 5081 4793 4225 5666 4857 4227 4423 4974 4133 5349 3518 6418 2914 1971 6925 3319 612 395 1590 6612 390 14711 3209 1795 11455 885 2280 5267 4293 3074 4347 4856 4716 4763 4703 4132 3764 4490 3811 4787 6240 5114 3864 4063 4402 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.06 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.00 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.02 -0.01 0.03 0.11 -0.03 0.12 0.15 0.10 0.11 0.17 0.02 -0.01 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.04 -0.01 -0.06 -0.02 -0.00 0.04 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 77

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages