Detailed information of deep learning profile BP000186.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000186.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR230RQK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.17 0.12 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4514 4072 3887 5493 6951 5025 3908 4653 3930 4287 4950 5109 5255 5483 4675 2934 4386 5621 2080 710 13754 1368 3353 16812 298 8462 1012 281 388 2885 8583 1802 2718 7531 3498 6089 4505 5078 4637 4203 5335 6686 4143 5169 5586 6077 5441 5149 5284 5226 ]
C [ 4659 3574 5015 6056 4061 3809 3291 4823 7784 6808 6159 5563 5183 4336 4847 6183 4036 2174 15085 18926 919 11261 7429 488 72 103 559 55 653 14940 816 10301 6775 4874 3923 3635 3384 5464 6711 8069 6537 3946 5564 4658 4622 4317 4528 4795 5026 5007 ]
G [ 5083 6762 6517 3739 4718 4769 4453 4513 3182 3587 4372 4637 4528 4026 5174 3051 6847 8648 1411 241 2958 6787 1502 1645 19586 11418 11239 19614 17452 599 9758 6063 1938 5623 5275 4195 8550 5338 4774 2663 2884 5402 5390 5345 4958 4365 4493 5575 5299 5308 ]
T [ 5863 5711 4700 4831 4389 6516 8467 6130 5223 5437 4638 4810 5153 6274 5423 7951 4850 3676 1543 242 2488 703 7835 1174 163 136 7309 169 1626 1695 962 1953 8688 2091 7423 6200 3680 4239 3997 5184 5363 4085 5022 4947 4953 5360 5657 4600 4510 4578 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.04 -0.02 -0.01 0.09 -0.04 0.06 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 0.01 ]
C [ 0.03 0.01 0.01 0.03 0.05 0.04 -0.01 0.11 0.18 -0.02 0.12 0.06 0.02 -0.01 -0.05 0.02 -0.03 -0.02 0.14 -0.01 0.08 0.05 0.04 0.02 0.02 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.00 0.03 0.18 0.13 0.11 0.18 0.14 -0.02 0.15 0.06 0.00 0.03 0.03 0.00 0.04 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.02 -0.05 0.06 -0.03 -0.03 -0.08 0.04 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 652

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 537

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages