Detailed information of deep learning profile BP000186.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000186.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR230RQK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.12 0.17 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.10 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4578 4510 4600 5657 5360 4953 4947 5022 4085 5363 5184 3997 4239 3680 6200 7423 2091 8688 1953 962 1695 1626 169 7309 136 163 1174 7835 703 2488 242 1543 3676 4850 7951 5423 6274 5153 4810 4638 5437 5223 6130 8467 6516 4389 4831 4700 5711 5863 ]
C [ 5308 5299 5575 4493 4365 4958 5345 5390 5402 2884 2663 4774 5338 8550 4195 5275 5623 1938 6063 9758 599 17452 19614 11239 11418 19586 1645 1502 6787 2958 241 1411 8648 6847 3051 5174 4026 4528 4637 4372 3587 3182 4513 4453 4769 4718 3739 6517 6762 5083 ]
G [ 5007 5026 4795 4528 4317 4622 4658 5564 3946 6537 8069 6711 5464 3384 3635 3923 4874 6775 10301 816 14940 653 55 559 103 72 488 7429 11261 919 18926 15085 2174 4036 6183 4847 4336 5183 5563 6159 6808 7784 4823 3291 3809 4061 6056 5015 3574 4659 ]
T [ 5226 5284 5149 5441 6077 5586 5169 4143 6686 5335 4203 4637 5078 4505 6089 3498 7531 2718 1802 8583 2885 388 281 1012 8462 298 16812 3353 1368 13754 710 2080 5621 4386 2934 4675 5483 5255 5109 4950 4287 3930 4653 3908 5025 6951 5493 3887 4072 4514 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.04 -0.08 -0.03 -0.03 0.06 -0.05 -0.02 -0.06 -0.02 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.04 0.00 0.03 0.03 0.00 0.06 0.15 -0.02 0.14 0.18 0.11 0.13 0.18 0.03 -0.00 0.06 0.09 -0.02 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.02 0.02 0.04 0.05 0.08 -0.01 0.14 -0.02 -0.03 0.02 -0.05 -0.01 0.02 0.06 0.12 -0.02 0.18 0.11 -0.01 0.04 0.05 0.03 0.01 0.01 0.03 ]
T [ 0.01 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.06 -0.04 0.09 -0.01 -0.02 0.04 -0.03 -0.00 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 652

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 537

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages