Detailed information of deep learning profile BP000177.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000177.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR211AFA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.19 0.06 0.08 0.19 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4574 4634 4513 4374 4526 5196 5103 4710 4581 4795 4200 5003 5032 3947 4270 3645 5999 7106 2306 8232 2178 1215 1652 1634 303 6494 272 213 1744 7282 828 3126 278 1611 3611 4716 6876 5160 5594 5029 4707 4637 5020 4989 5644 7533 5973 4219 4621 4534 ]
C [ 5325 5177 5370 5361 5418 4766 4659 5308 5574 5472 5333 3589 3396 5160 5491 8246 4376 5144 5955 2324 5921 9861 756 17060 19115 10894 12041 19152 2217 2059 7305 3404 381 1856 8554 6259 3410 5082 4401 4760 4939 4643 3996 3702 4828 4729 4926 4835 4192 6318 ]
G [ 5227 5067 5084 5120 4889 4811 4661 4680 4780 5464 4321 6271 7201 6427 5254 3752 3937 4333 4838 6502 10028 1070 14604 769 139 1119 245 143 758 7271 10156 1436 18503 14216 2640 4513 6662 5291 4843 5228 5495 5957 6671 7349 4983 3779 4193 4430 5933 5204 ]
T [ 4842 5090 5001 5113 5135 5195 5545 5270 5033 4237 6114 5105 4339 4434 4953 4325 5656 3385 6869 2910 1841 7822 2956 505 411 1461 7410 460 15249 3356 1679 12002 806 2285 5163 4480 3020 4435 5130 4951 4827 4731 4281 3928 4513 3927 4876 6484 5222 3912 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 0.00 0.07 0.15 -0.02 0.15 0.19 0.12 0.14 0.20 0.04 -0.01 0.06 0.10 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.16 -0.03 -0.03 0.02 -0.06 -0.02 0.02 0.07 0.14 -0.01 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.07 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages