Detailed information of deep learning profile BP000177.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000177.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR211AFA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.19 0.08 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3912 5222 6484 4876 3927 4513 3928 4281 4731 4827 4951 5130 4435 3020 4480 5163 2285 806 12002 1679 3356 15249 460 7410 1461 411 505 2956 7822 1841 2910 6869 3385 5656 4325 4953 4434 4339 5105 6114 4237 5033 5270 5545 5195 5135 5113 5001 5090 4842 ]
C [ 5204 5933 4430 4193 3779 4983 7349 6671 5957 5495 5228 4843 5291 6662 4513 2640 14216 18503 1436 10156 7271 758 143 245 1119 139 769 14604 1070 10028 6502 4838 4333 3937 3752 5254 6427 7201 6271 4321 5464 4780 4680 4661 4811 4889 5120 5084 5067 5227 ]
G [ 6318 4192 4835 4926 4729 4828 3702 3996 4643 4939 4760 4401 5082 3410 6259 8554 1856 381 3404 7305 2059 2217 19152 12041 10894 19115 17060 756 9861 5921 2324 5955 5144 4376 8246 5491 5160 3396 3589 5333 5472 5574 5308 4659 4766 5418 5361 5370 5177 5325 ]
T [ 4534 4621 4219 5973 7533 5644 4989 5020 4637 4707 5029 5594 5160 6876 4716 3611 1611 278 3126 828 7282 1744 213 272 6494 303 1634 1652 1215 2178 8232 2306 7106 5999 3645 4270 3947 5032 5003 4200 4795 4581 4710 5103 5196 4526 4374 4513 4634 4574 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.07 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.01 0.14 0.07 0.02 -0.02 -0.06 0.02 -0.03 -0.03 0.16 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.10 0.06 -0.01 0.04 0.20 0.14 0.12 0.19 0.15 -0.02 0.15 0.07 0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages