Detailed information of deep learning profile BP000176.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000176.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR206ETG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4540 4007 3774 5515 6853 4986 3814 4522 3741 4283 4751 5144 5095 5153 4404 2878 4457 5539 1962 529 13018 1237 3181 16318 255 7097 1728 608 1063 3606 7617 2410 3206 6797 3737 5815 4313 5028 4619 4309 5125 6235 4311 5012 5339 5584 5281 5029 5193 5122 ]
C [ 4684 3516 5171 6005 4197 3878 3295 4910 8063 6729 6201 5307 5105 4488 5378 6770 4219 2209 15484 19043 864 11101 7865 430 91 183 1016 489 1508 12690 1822 9098 6201 4644 4088 3751 3652 5239 6365 7112 6076 4129 5370 4629 4532 4516 4640 4717 4894 4967 ]
G [ 4779 6793 6386 3649 4698 4656 4338 4469 3123 3497 4321 4591 4309 3941 4769 2890 6413 8384 1201 137 2995 6868 1467 1901 19326 12288 10950 18153 15418 1419 8845 5851 2512 5769 5284 4495 8001 5331 4829 3312 3483 5208 5202 5337 5017 4514 4507 5413 5244 5097 ]
T [ 5827 5514 4499 4661 4082 6310 8383 5929 4903 5321 4557 4788 5321 6248 5279 7292 4741 3698 1183 121 2953 624 7317 1181 158 262 6136 580 1841 2115 1546 2471 7911 2620 6721 5769 3864 4232 4017 5097 5146 4258 4947 4852 4942 5216 5402 4671 4499 4644 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.03 0.11 0.05 0.00 -0.02 -0.06 0.01 -0.03 -0.03 0.11 -0.01 0.06 0.03 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.08 0.06 -0.01 0.02 0.17 0.12 0.09 0.16 0.11 -0.02 0.11 0.05 -0.00 0.02 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.02 -0.05 0.05 -0.04 -0.04 -0.06 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 627

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 357

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages