Detailed information of deep learning profile BP000176.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000176.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR206ETG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4644 4499 4671 5402 5216 4942 4852 4947 4258 5146 5097 4017 4232 3864 5769 6721 2620 7911 2471 1546 2115 1841 580 6136 262 158 1181 7317 624 2953 121 1183 3698 4741 7292 5279 6248 5321 4788 4557 5321 4903 5929 8383 6310 4082 4661 4499 5514 5827 ]
C [ 5097 5244 5413 4507 4514 5017 5337 5202 5208 3483 3312 4829 5331 8001 4495 5284 5769 2512 5851 8845 1419 15418 18153 10950 12288 19326 1901 1467 6868 2995 137 1201 8384 6413 2890 4769 3941 4309 4591 4321 3497 3123 4469 4338 4656 4698 3649 6386 6793 4779 ]
G [ 4967 4894 4717 4640 4516 4532 4629 5370 4129 6076 7112 6365 5239 3652 3751 4088 4644 6201 9098 1822 12690 1508 489 1016 183 91 430 7865 11101 864 19043 15484 2209 4219 6770 5378 4488 5105 5307 6201 6729 8063 4910 3295 3878 4197 6005 5171 3516 4684 ]
T [ 5122 5193 5029 5281 5584 5339 5012 4311 6235 5125 4309 4619 5028 4313 5815 3737 6797 3206 2410 7617 3606 1063 608 1728 7097 255 16318 3181 1237 13018 529 1962 5539 4457 2878 4404 5153 5095 5144 4751 4283 3741 4522 3814 4986 6853 5515 3774 4007 4540 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.06 -0.04 -0.04 0.05 -0.05 -0.02 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.02 -0.00 0.05 0.11 -0.02 0.11 0.16 0.09 0.12 0.17 0.02 -0.01 0.06 0.08 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.03 0.06 -0.01 0.11 -0.03 -0.03 0.01 -0.06 -0.02 0.00 0.05 0.11 -0.03 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 627

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 357

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages