Detailed information of deep learning profile BP000169.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in chondrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000169.1
Cell line/tissue: chondrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR190BZA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 0.03 -0.00 -0.01 0.00 -0.01 ]
C [ -0.00 0.01 -0.00 0.03 0.08 -0.00 0.22 0.32 0.11 0.14 0.34 0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.02 0.05 0.00 0.20 0.00 -0.00 0.00 0.00 0.00 -0.00 0.05 0.09 0.00 0.35 0.21 ]
T [ -0.01 0.02 -0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 0.03 0.00 0.16 -0.00 0.00 0.06 0.00 -0.00 ]

Frequency matrix

       
A [ 6 7 11 3 6 10 9 5 11 10 6 5 8 12 8 5 5 8 2 3 6 6 6 5 7 6 6 10 7 10 12 9 6 12 1 21 3 1 1 5 0 13 0 1 5 13 2 7 0 3 ]
C [ 16 14 8 11 17 12 9 12 11 5 10 14 17 14 13 23 23 19 22 22 20 17 24 24 27 24 21 17 19 18 15 19 15 13 13 1 15 15 1 31 36 22 22 36 6 1 17 7 1 0 ]
G [ 8 7 11 10 7 8 8 10 5 11 11 11 8 3 8 5 8 3 3 5 5 4 1 1 0 0 6 6 4 6 2 4 5 2 9 11 17 0 30 0 1 1 0 0 1 21 16 1 36 33 ]
T [ 7 9 7 13 7 7 11 10 10 11 10 7 4 8 8 4 1 7 10 7 6 10 6 7 3 7 4 4 7 3 8 5 11 10 14 4 2 21 5 1 0 1 15 0 25 2 2 22 0 1 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.03 0.07 -0.07 0.08 -0.02 -0.10 -0.05 0.00 -0.10 0.06 -0.14 -0.08 -0.05 0.11 -0.11 -0.04 -0.16 -0.08 ]
C [ 0.02 0.06 -0.01 0.03 0.04 -0.03 0.08 0.23 -0.06 0.26 0.32 0.19 0.26 0.34 0.05 -0.04 0.08 0.11 -0.09 -0.08 ]
G [ 0.04 0.02 0.03 0.03 0.07 0.09 0.14 -0.04 0.25 -0.10 -0.13 -0.02 -0.17 -0.09 -0.03 0.09 0.22 -0.04 0.36 0.22 ]
T [ 0.02 0.00 0.03 -0.03 0.07 -0.02 -0.03 0.06 -0.03 -0.12 -0.12 -0.12 0.10 -0.11 0.22 -0.01 -0.05 0.10 -0.06 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages