Detailed information of deep learning profile BP000168.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000168.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR186NVR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.03 -0.00 0.07 0.11 0.04 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4584 4476 4599 5351 5181 4916 4789 4952 4096 5056 4960 3953 4154 3813 5611 6581 2584 7673 2393 1560 2168 1807 580 6149 290 150 1204 7396 536 2764 100 1143 3640 4647 7414 5293 6169 5162 4637 4574 5176 4792 5997 8564 6289 3909 4573 4401 5553 5791 ]
C [ 5242 5308 5553 4710 4684 5182 5363 5344 5400 3694 3451 4978 5479 8066 4627 5502 5904 2731 6078 9057 1343 15502 18220 10983 12456 19426 1970 1623 6775 3184 116 1237 8624 6679 2943 4901 4078 4437 4681 4272 3541 3053 4474 4374 4718 4763 3700 6811 7020 5027 ]
G [ 4975 5064 4760 4690 4621 4658 4831 5401 4243 6050 7208 6383 5397 3802 3957 4163 4689 6306 9009 1828 12912 1534 523 1196 251 94 525 7852 11530 967 19353 15782 2220 4338 6866 5408 4525 5207 5526 6384 7083 8508 4907 3346 4023 4257 6309 5148 3527 4764 ]
T [ 5131 5084 5020 5181 5446 5176 4949 4235 6193 5132 4313 4618 4902 4251 5737 3686 6755 3222 2452 7487 3509 1089 609 1604 6935 262 16233 3061 1091 13017 363 1770 5448 4268 2709 4330 5160 5126 5088 4702 4132 3579 4554 3648 4902 7003 5350 3572 3832 4350 ]

Hypothetical CWM

   
A [ 0.01 0.01 -0.02 0.02 -0.01 -0.04 -0.01 -0.00 -0.03 0.01 -0.06 -0.04 -0.03 0.04 -0.05 -0.03 -0.06 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.00 0.01 0.01 -0.01 0.03 0.08 -0.02 0.08 0.12 0.07 0.09 0.13 0.02 -0.02 0.04 0.06 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.02 0.04 -0.01 0.08 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.09 -0.02 0.14 0.09 -0.01 0.02 0.04 0.02 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.04 0.03 -0.04 0.07 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 838

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 454

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 346

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 55

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
BP000092.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens MA0139.2
BP000093.1 CTCF ENCSR000DVH kidney epithelial cell Homo sapiens MA0139.2
BP000094.1 CTCF ENCSR000DVI retinal pigment epithelial cell Homo sapiens MA0139.2
BP000095.1 CTCF ENCSR000DVP endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000096.1 CTCF ENCSR000DVQ fibroblast of villous mesenchyme Homo sapiens MA0139.2
BP000097.1 CTCF ENCSR000DWE K562 Homo sapiens MA0139.2
BP000098.1 CTCF ENCSR000DWH MCF-7 Homo sapiens MA0139.2
BP000099.1 CTCF ENCSR000DWN NB4 Homo sapiens MA0139.2
BP000100.1 CTCF ENCSR000DWQ foreskin fibroblast Homo sapiens MA0139.2
Showing 10 profiles of page 10 from 45 pages