Detailed information of deep learning profile BP000168.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000168.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR186NVR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.04 0.11 0.07 -0.00 0.03 0.01 -0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4350 3832 3572 5350 7003 4902 3648 4554 3579 4132 4702 5088 5126 5160 4330 2709 4268 5448 1770 363 13017 1091 3061 16233 262 6935 1604 609 1089 3509 7487 2452 3222 6755 3686 5737 4251 4902 4618 4313 5132 6193 4235 4949 5176 5446 5181 5020 5084 5131 ]
C [ 4764 3527 5148 6309 4257 4023 3346 4907 8508 7083 6384 5526 5207 4525 5408 6866 4338 2220 15782 19353 967 11530 7852 525 94 251 1196 523 1534 12912 1828 9009 6306 4689 4163 3957 3802 5397 6383 7208 6050 4243 5401 4831 4658 4621 4690 4760 5064 4975 ]
G [ 5027 7020 6811 3700 4763 4718 4374 4474 3053 3541 4272 4681 4437 4078 4901 2943 6679 8624 1237 116 3184 6775 1623 1970 19426 12456 10983 18220 15502 1343 9057 6078 2731 5904 5502 4627 8066 5479 4978 3451 3694 5400 5344 5363 5182 4684 4710 5553 5308 5242 ]
T [ 5791 5553 4401 4573 3909 6289 8564 5997 4792 5176 4574 4637 5162 6169 5293 7414 4647 3640 1143 100 2764 536 7396 1204 150 290 6149 580 1807 2168 1560 2393 7673 2584 6581 5611 3813 4154 3953 4960 5056 4096 4952 4789 4916 5181 5351 4599 4476 4584 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.07 -0.04 0.03 -0.04 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 ]
C [ 0.01 0.02 0.04 0.02 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.08 -0.01 0.04 0.02 0.01 0.01 0.00 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.06 0.04 -0.02 0.02 0.13 0.09 0.07 0.12 0.08 -0.02 0.08 0.03 -0.01 0.01 0.01 0.00 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.03 -0.05 0.04 -0.03 -0.04 -0.06 0.01 -0.03 -0.00 -0.01 -0.04 -0.01 0.02 -0.02 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 838

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 454

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 346

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 55

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages