Detailed information of deep learning profile BP000167.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000167.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR185CCV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4141 3709 3548 5173 6457 4623 3509 4222 3573 3866 4525 4643 4770 4831 4220 2689 4084 5227 1824 542 12153 1227 2971 15223 278 6991 1310 402 607 2960 7210 1992 2752 6399 3413 5459 4074 4750 4285 3987 4848 5878 3952 4708 4916 5300 4854 4756 4796 4715 ]
C [ 4478 3420 4853 5757 3968 3665 3161 4671 7461 6539 5765 5242 4954 4273 4830 6095 4102 2172 14316 17884 1008 10301 7054 630 93 239 898 234 1219 12986 1393 9173 5937 4600 3872 3603 3497 5038 6007 7003 5889 3958 5096 4468 4328 4274 4406 4510 4733 4868 ]
G [ 4770 6390 6190 3562 4543 4530 4164 4307 3077 3372 4142 4507 4184 3966 4701 2987 6158 7927 1388 197 2986 6627 1657 1769 18263 11301 10248 17797 15365 1003 9080 5497 2312 5514 5012 4209 7768 5089 4666 3138 3261 5014 5124 5144 4960 4398 4475 5212 5042 4951 ]
T [ 5383 5253 4181 4280 3804 5954 7938 5572 4661 4995 4340 4380 4864 5702 5021 7001 4428 3446 1244 149 2625 617 7090 1150 138 241 6316 339 1581 1823 1089 2110 7771 2259 6475 5501 3433 3895 3814 4644 4774 3922 4600 4452 4568 4800 5037 4294 4201 4238 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.11 0.16 -0.03 0.11 0.05 -0.00 -0.01 -0.06 0.00 -0.04 -0.03 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.16 0.12 0.09 0.16 0.12 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.02 -0.05 0.05 -0.04 -0.03 -0.06 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 247

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 127

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages