Detailed information of deep learning profile BP000167.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000167.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR185CCV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4238 4201 4294 5037 4800 4568 4452 4600 3922 4774 4644 3814 3895 3433 5501 6475 2259 7771 2110 1089 1823 1581 339 6316 241 138 1150 7090 617 2625 149 1244 3446 4428 7001 5021 5702 4864 4380 4340 4995 4661 5572 7938 5954 3804 4280 4181 5253 5383 ]
C [ 4951 5042 5212 4475 4398 4960 5144 5124 5014 3261 3138 4666 5089 7768 4209 5012 5514 2312 5497 9080 1003 15365 17797 10248 11301 18263 1769 1657 6627 2986 197 1388 7927 6158 2987 4701 3966 4184 4507 4142 3372 3077 4307 4164 4530 4543 3562 6190 6390 4770 ]
G [ 4868 4733 4510 4406 4274 4328 4468 5096 3958 5889 7003 6007 5038 3497 3603 3872 4600 5937 9173 1393 12986 1219 234 898 239 93 630 7054 10301 1008 17884 14316 2172 4102 6095 4830 4273 4954 5242 5765 6539 7461 4671 3161 3665 3968 5757 4853 3420 4478 ]
T [ 4715 4796 4756 4854 5300 4916 4708 3952 5878 4848 3987 4285 4750 4074 5459 3413 6399 2752 1992 7210 2960 607 402 1310 6991 278 15223 2971 1227 12153 542 1824 5227 4084 2689 4220 4831 4770 4643 4525 3866 3573 4222 3509 4623 6457 5173 3548 3709 4141 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.06 -0.03 -0.04 0.05 -0.05 -0.02 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.12 0.16 0.09 0.12 0.16 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.03 -0.04 0.00 -0.06 -0.01 -0.00 0.05 0.11 -0.03 0.16 0.11 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 247

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 127

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages