Detailed information of deep learning profile BP000108.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000108.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DYD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5195 4774 4486 6171 7818 5766 4323 5373 4301 4815 5581 5822 5578 5790 5153 3561 5111 6375 2416 925 14048 1840 3756 17594 389 7387 2087 591 1120 4376 8094 2685 3787 7529 4379 6404 4972 5782 5255 5150 5867 6626 5046 5703 5929 6130 5969 5931 5819 5720 ]
C [ 5359 4097 5650 6908 4771 4637 3976 5504 9021 7792 6804 6185 5941 5428 6094 7381 4904 2756 16979 21031 1564 11875 8253 640 153 225 925 340 1954 14295 2279 10869 6956 5273 4665 4471 4504 5963 6780 7700 6518 5023 5927 5383 5290 5402 5384 5475 5752 5707 ]
G [ 5592 7321 7475 4301 5147 5214 5013 5056 3789 4208 4899 5329 5205 4689 5502 3593 7076 9242 1779 395 3071 8048 2112 2693 21872 14677 12762 21130 17544 1559 10491 6028 2844 6552 5815 5126 8840 5996 5860 4166 4401 5889 6030 5934 5931 5436 5505 5936 6031 5840 ]
T [ 6521 6475 5056 5287 4931 7050 9355 6734 5556 5852 5383 5331 5943 6760 5918 8132 5576 4294 1493 316 3984 904 8546 1740 253 378 6893 606 2049 2437 1803 3085 9080 3313 7808 6666 4351 4926 4772 5651 5881 5129 5664 5647 5517 5699 5809 5325 5065 5400 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.03 -0.02 -0.02 0.07 -0.04 0.03 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.04 0.02 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.15 0.10 0.08 0.13 0.10 -0.01 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages