Detailed information of deep learning profile BP000108.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000108.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DYD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5400 5065 5325 5809 5699 5517 5647 5664 5129 5881 5651 4772 4926 4351 6666 7808 3313 9080 3085 1803 2437 2049 606 6893 378 253 1740 8546 904 3984 316 1493 4294 5576 8132 5918 6760 5943 5331 5383 5852 5556 6734 9355 7050 4931 5287 5056 6475 6521 ]
C [ 5840 6031 5936 5505 5436 5931 5934 6030 5889 4401 4166 5860 5996 8840 5126 5815 6552 2844 6028 10491 1559 17544 21130 12762 14677 21872 2693 2112 8048 3071 395 1779 9242 7076 3593 5502 4689 5205 5329 4899 4208 3789 5056 5013 5214 5147 4301 7475 7321 5592 ]
G [ 5707 5752 5475 5384 5402 5290 5383 5927 5023 6518 7700 6780 5963 4504 4471 4665 5273 6956 10869 2279 14295 1954 340 925 225 153 640 8253 11875 1564 21031 16979 2756 4904 7381 6094 5428 5941 6185 6804 7792 9021 5504 3976 4637 4771 6908 5650 4097 5359 ]
T [ 5720 5819 5931 5969 6130 5929 5703 5046 6626 5867 5150 5255 5782 4972 6404 4379 7529 3787 2685 8094 4376 1120 591 2087 7387 389 17594 3756 1840 14048 925 2416 6375 5111 3561 5153 5790 5578 5822 5581 4815 4301 5373 4323 5766 7818 6171 4486 4774 5195 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.03 -0.02 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.01 0.10 0.13 0.08 0.10 0.15 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.01 0.09 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.09 -0.02 0.14 0.09 -0.01 0.02 0.04 0.01 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.03 -0.04 0.07 -0.02 -0.02 0.03 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages