Detailed information of deep learning profile BP000102.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000102.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4780 4510 4669 5366 5195 4882 4872 5015 4266 5107 5052 4128 4214 3800 5917 7014 2605 8325 2496 1393 1978 1679 443 5805 299 172 1398 7415 771 3237 273 1356 3799 4745 7186 5264 6085 5277 4777 4584 5282 5035 5991 8385 6308 4153 4753 4524 5556 5742 ]
C [ 5228 5333 5494 4788 4798 5273 5498 5339 5340 3770 3519 5303 5382 8121 4513 5296 5958 2373 5563 9732 1181 16304 19015 11702 12510 19607 2019 1790 7220 3251 338 1592 8452 6490 3176 4969 4176 4644 4718 4490 3789 3230 4655 4479 4783 4804 3819 6674 6824 5049 ]
G [ 5050 5118 4819 4772 4707 4653 4821 5409 4478 6206 7184 6190 5358 3828 3912 4215 4788 6301 9870 1681 13433 1383 253 938 221 116 613 7779 10717 1228 18818 15196 2463 4459 6757 5457 4766 5237 5575 6240 6923 8044 5053 3505 4078 4218 6195 5274 3722 4832 ]
T [ 5135 5232 5211 5267 5493 5385 5002 4430 6109 5110 4438 4572 5239 4444 5851 3668 6842 3194 2264 7387 3601 827 482 1748 7163 298 16163 3209 1485 12477 764 2049 5479 4499 3074 4503 5166 5035 5123 4879 4199 3884 4494 3824 5024 7018 5426 3721 4091 4570 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.01 -0.05 0.01 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.01 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.05 0.12 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.12 -0.03 -0.05 0.01 -0.06 -0.03 -0.01 0.05 0.11 -0.03 0.18 0.12 -0.01 0.04 0.06 0.03 0.01 0.01 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.06 -0.07 0.04 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.02 0.01 -0.02 -0.03 -0.01 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages