Detailed information of deep learning profile BP000102.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000102.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4570 4091 3721 5426 7018 5024 3824 4494 3884 4199 4879 5123 5035 5166 4503 3074 4499 5479 2049 764 12477 1485 3209 16163 298 7163 1748 482 827 3601 7387 2264 3194 6842 3668 5851 4444 5239 4572 4438 5110 6109 4430 5002 5385 5493 5267 5211 5232 5135 ]
C [ 4832 3722 5274 6195 4218 4078 3505 5053 8044 6923 6240 5575 5237 4766 5457 6757 4459 2463 15196 18818 1228 10717 7779 613 116 221 938 253 1383 13433 1681 9870 6301 4788 4215 3912 3828 5358 6190 7184 6206 4478 5409 4821 4653 4707 4772 4819 5118 5050 ]
G [ 5049 6824 6674 3819 4804 4783 4479 4655 3230 3789 4490 4718 4644 4176 4969 3176 6490 8452 1592 338 3251 7220 1790 2019 19607 12510 11702 19015 16304 1181 9732 5563 2373 5958 5296 4513 8121 5382 5303 3519 3770 5340 5339 5498 5273 4798 4788 5494 5333 5228 ]
T [ 5742 5556 4524 4753 4153 6308 8385 5991 5035 5282 4584 4777 5277 6085 5264 7186 4745 3799 1356 273 3237 771 7415 1398 172 299 5805 443 1679 1978 1393 2496 8325 2605 7014 5917 3800 4214 4128 5052 5107 4266 5015 4872 4882 5195 5366 4669 4510 4780 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.03 -0.02 0.01 -0.02 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.04 -0.07 -0.06 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.01 0.01 0.03 0.06 0.04 -0.01 0.12 0.18 -0.03 0.11 0.05 -0.01 -0.03 -0.06 0.01 -0.05 -0.03 0.12 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.12 0.05 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.01 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.01 -0.05 -0.01 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages