Detailed information of deep learning profile BP000099.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in NB4 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000099.1
Cell line/tissue: NB4
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWN
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.16 0.06 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4677 4328 4503 5066 4991 4674 4720 4762 4227 4909 4803 3992 4190 3744 5910 6904 2731 8170 2458 1409 2004 1616 363 6054 298 210 1598 7450 818 3544 351 1397 3694 4656 6804 5133 5811 4875 4679 4589 5084 4927 5763 7638 6001 4159 4607 4423 5398 5476 ]
C [ 5023 5165 5186 4669 4584 5097 5184 5150 5026 3844 3604 5136 5115 7656 4329 4983 5715 2135 5204 9162 1129 15627 18473 11167 12433 18760 2318 1857 6991 2537 479 1571 7976 6085 3268 4757 4124 4488 4512 4344 3683 3419 4397 4520 4592 4537 3802 6327 6366 4938 ]
G [ 4835 4953 4670 4629 4619 4593 4690 5159 4461 5797 6728 5723 5045 3810 3926 4096 4537 6099 9699 1820 12959 1404 210 632 142 111 517 6990 9939 1558 17722 14381 2477 4356 6309 5113 4579 5171 5462 5889 6645 7443 4716 3515 3955 4271 5833 4890 3650 4506 ]
T [ 4891 4980 5067 5062 5232 5062 4832 4355 5712 4876 4291 4575 5076 4216 5261 3443 6443 3022 2065 7035 3334 779 380 1573 6553 345 14993 3129 1678 11787 874 2077 5279 4329 3045 4423 4912 4892 4773 4604 4014 3637 4550 3753 4878 6459 5184 3786 4012 4506 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.05 0.01 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.05 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.01 0.03 0.01 0.02 0.03 -0.01 0.04 0.12 -0.02 0.12 0.17 0.10 0.13 0.17 0.03 -0.02 0.05 0.06 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.03 -0.00 -0.07 -0.03 -0.02 0.04 0.10 -0.03 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.07 0.03 -0.06 0.08 -0.02 -0.03 0.03 -0.04 -0.01 0.01 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages